Package: ohtadstats 2.1.1
Paul F. Petrowski
ohtadstats: Tomoka Ohta D Statistics
Calculate's Tomoka Ohta's partitioning of linkage disequilibrium, deemed D-statistics, for pairs of loci. Petrowski et al. (2019) <doi:10.5334/jors.250>.
Authors:
ohtadstats_2.1.1.tar.gz
ohtadstats_2.1.1.zip(r-4.5)ohtadstats_2.1.1.zip(r-4.4)ohtadstats_2.1.1.zip(r-4.3)
ohtadstats_2.1.1.tgz(r-4.5-any)ohtadstats_2.1.1.tgz(r-4.4-any)ohtadstats_2.1.1.tgz(r-4.3-any)
ohtadstats_2.1.1.tar.gz(r-4.5-noble)ohtadstats_2.1.1.tar.gz(r-4.4-noble)
ohtadstats_2.1.1.tgz(r-4.4-emscripten)ohtadstats_2.1.1.tgz(r-4.3-emscripten)
ohtadstats.pdf |ohtadstats.html✨
ohtadstats/json (API)
| # Install 'ohtadstats' in R: |
| install.packages('ohtadstats', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pfpetrowski/ohtadstats/issues
- beissinger_data - Chicken Genotype Data
- miyashita_langley_data - Drosophila melanogaster genotypes
Last updated 2 days agofrom:9c58980697 (on package/ohtadstats). Checks:6 OK, 3 ERROR. Indexed: no.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 10 2025 |
| R-4.5-win | ERROR | Mar 10 2025 |
| R-4.5-mac | ERROR | Mar 10 2025 |
| R-4.5-linux | ERROR | Mar 10 2025 |
| R-4.4-win | OK | Mar 10 2025 |
| R-4.4-mac | OK | Mar 10 2025 |
| R-4.4-linux | OK | Mar 10 2025 |
| R-4.3-win | OK | Mar 10 2025 |
| R-4.3-mac | OK | Mar 10 2025 |
Exports:dfilterdheatmapdparalleldstatdwrapper
Dependencies:lattice
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Chicken Genotype Data | beissinger_data |
| Filtering datasets for subpopulations with low sample sizes | dfilter |
| Heatmap Plot | dheatmap |
| Compute Ohta's D Statistics in a manner optimized for parallelization | dparallel |
| Tomoka Ohta's D Statistics | dstat |
| Ohta D Statistic Wrapper | dwrapper |
| Drosophila melanogaster genotypes | miyashita_langley_data |
