Package: glycanr 0.4.0

Ivo Ugrina

glycanr: Tools for Analysing N-Glycan Data

Useful utilities in N-glycan data analysis. This package tries to fill the gap in N-glycan data analysis by providing easy to use functions for basic operations on data (see <https://en.wikipedia.org/wiki/Glycomics> for more details on Glycomics). At the moment 'glycanr' is mostly oriented to data obtained by UPLC (Ultra Performance Liquid Chromatography) and LCMS (Liquid chromatography–mass spectrometry) analysis of Plasma and IgG glycome.

Authors:Ivo Ugrina [aut, cre, cph], Lucija Klaric [aut], Alyce Russell [aut], Frano Vuckovic [aut]

glycanr_0.4.0.tar.gz
glycanr_0.4.0.zip(r-4.5)glycanr_0.4.0.zip(r-4.4)glycanr_0.4.0.zip(r-4.3)
glycanr_0.4.0.tgz(r-4.4-any)glycanr_0.4.0.tgz(r-4.3-any)
glycanr_0.4.0.tar.gz(r-4.5-noble)glycanr_0.4.0.tar.gz(r-4.4-noble)
glycanr_0.4.0.tgz(r-4.4-emscripten)glycanr_0.4.0.tgz(r-4.3-emscripten)
glycanr.pdf |glycanr.html
glycanr/json (API)
NEWS

# Install 'glycanr' in R:
install.packages('glycanr', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/iugrina/glycanr/issues

Datasets:
  • mpiu - Multiple plates IgG UPLC data example
  • mpiunorm - Normalized mpiu data

On CRAN:

archivedpackagesr-universe

3.85 score 5 stars 14 scripts 185 downloads 1 mentions 12 exports 47 dependencies

Last updated 8 days agofrom:6270782de2 (on package/glycanr). Checks:4 OK, 1 ERROR, 2 NOTE. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 13 2025
R-4.5-winOKJan 13 2025
R-4.5-linuxERRORJan 13 2025
R-4.4-winOKJan 13 2025
R-4.4-macOKJan 13 2025
R-4.3-winNOTEJan 13 2025
R-4.3-macNOTEJan 13 2025

Exports:glyco.outliersglyco.plotildtildt.translateiudtiudt.translatemediannormmedianquotientnormphdtquantilenormrefpeaknormtanorm

Dependencies:clicodetoolscoincolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelibcoinlifecyclemagrittrMASSMatrixmatrixStatsmgcvmodeltoolsmultcompmunsellmvtnormnlmepillarpkgconfigpurrrR6RColorBrewerrlangsandwichscalesstringistringrsurvivalTH.datatibbletidyrtidyselectutf8vctrsviridisLitewithrzoo

Introduction vignette

Rendered fromintroduction.Rmdusingknitr::knitron Jan 13 2025.

Last update: 2025-01-13
Started: 2025-01-13

Plotting vignette

Rendered fromplots.Rmdusingknitr::knitron Jan 13 2025.

Last update: 2025-01-13
Started: 2025-01-13