Package: wtest 3.2
Rui Sun
wtest: The W-Test for Genetic Interactions Testing
Perform the calculation of W-test, diagnostic checking, calculate minor allele frequency (MAF) and odds ratio.
Authors:
wtest_3.2.tar.gz
wtest_3.2.zip(r-4.7-x86_64)wtest_3.2.zip(r-4.7-arm64)wtest_3.2.zip(r-4.6-x86_64)wtest_3.2.zip(r-4.6-arm64)wtest_3.2.zip(r-4.5-x86_64)
wtest_3.2.tgz(r-4.6-x86_64)wtest_3.2.tgz(r-4.6-arm64)wtest_3.2.tgz(r-4.5-x86_64)wtest_3.2.tgz(r-4.5-arm64)
wtest_3.2.tar.gz(r-4.7-arm64)wtest_3.2.tar.gz(r-4.7-x86_64)wtest_3.2.tar.gz(r-4.6-arm64)wtest_3.2.tar.gz(r-4.6-x86_64)
wtest_3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
wtest/json (API)
| # Install 'wtest' in R: |
| install.packages('wtest', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues
- CpG.pos - Position of CpG Sites for the methylation Data
- diabetes.geno - Genotype Data of Candidate Diabetes Genes
- genotype - Example Genotype Data
- methylation - Example Methylation Data
- phenotype1 - Phenotype of the diabetes.geno Data
- phenotype2 - Simulated Phenotype of the genotype-methylation Data
- SNP.pos - Pseudo Position of SNPs for the genotype Data
Last updated from:a39cdb9fca (on package/wtest). Checks:13 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 83 | ||
| linux-devel-x86_64 | NOTE | 104 | ||
| source / vignettes | OK | 119 | ||
| linux-release-arm64 | NOTE | 78 | ||
| linux-release-x86_64 | NOTE | 122 | ||
| macos-release-arm64 | NOTE | 89 | ||
| macos-release-x86_64 | NOTE | 191 | ||
| macos-oldrel-arm64 | NOTE | 76 | ||
| macos-oldrel-x86_64 | NOTE | 179 | ||
| windows-devel-arm64 | NOTE | 201 | ||
| windows-devel-x86_64 | NOTE | 97 | ||
| windows-release-arm64 | NOTE | 263 | ||
| windows-release-x86_64 | NOTE | 86 | ||
| windows-oldrel-x86_64 | NOTE | 75 | ||
| wasm-release | OK | 74 |
Exports:hfhf.snps.methmafmethylation.recodeodds.ratiow.diagnosisw.qqplotwtestwtest.highwtest.snps.meth
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Position of CpG Sites for the methylation Data | CpG.pos |
| Genotype Data of Candidate Diabetes Genes | diabetes.geno |
| Example Genotype Data | genotype |
| Patameter Estimation for W-test Probability Distribution | hf |
| Parameter Estimation for W-test Probability Distribution in Gene-methylation Data | hf.snps.meth |
| Minor Allele Frequency | maf |
| Example Methylation Data | methylation |
| Recode Methylation Data | methylation.recode |
| Odds Ratio | odds.ratio |
| Phenotype of the diabetes.geno Data | phenotype1 |
| Simulated Phenotype of the genotype-methylation Data | phenotype2 |
| Pseudo Position of SNPs for the genotype Data | SNP.pos |
| W-test Probability Distribution Diagnostic Plot | w.diagnosis |
| W P-values Diagnosis by Q-Q Plot | w.qqplot |
| W-test | wtest |
| W-test for High Order Interaction Analysis | wtest.high |
| W-test for Gene-methylation Interaction Analysis | wtest.snps.meth |