Package: velociraptr 1.1.0
Andrew A Zaffos
velociraptr: Fossil Analysis
Functions for downloading, reshaping, culling, cleaning, and analyzing fossil data from the Paleobiology Database <https://paleobiodb.org>.
Authors:
velociraptr_1.1.0.tar.gz
velociraptr_1.1.0.zip(r-4.7-any)velociraptr_1.1.0.zip(r-4.6-any)velociraptr_1.1.0.zip(r-4.5-any)
velociraptr_1.1.0.tgz(r-4.6-any)velociraptr_1.1.0.tgz(r-4.5-any)
velociraptr_1.1.0.tar.gz(r-4.7-any)velociraptr_1.1.0.tar.gz(r-4.6-any)
velociraptr_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
velociraptr/json (API)
| # Install 'velociraptr' in R: |
| install.packages('velociraptr', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues
Last updated from:e92c08fe5d (on package/velociraptr). Checks:7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 105 | ||
| source / vignettes | OK | 157 | ||
| linux-release | NOTE | 134 | ||
| macos-release | NOTE | 105 | ||
| macos-oldrel | NOTE | 99 | ||
| windows-devel | NOTE | 57 | ||
| windows-release | NOTE | 64 | ||
| windows-oldrel | NOTE | 52 | ||
| wasm-release | OK | 99 |
Exports:abundanceMatrixageRangescleanTaxonomycompleteTurnoversconstrainAgescullMatrixdownloadPaleogeographydownloadPBDBdownloadPlacesdownloadTimefixedLatitudemeanAlphamultiplicativeBetamultiplyAgesnotEndemicpresenceMatrixsampleBetataxonAlphataxonBetatotalBetatotalGamma
Dependencies:classclassIntDBIe1071KernSmoothproxyRcpps2sfunitswk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create a community matrix of taxon abundances | abundanceMatrix |
| Find the age range for each taxon in a dataframe | ageRanges |
| Clean taxonomic names | cleanTaxonomy |
| Constrain a dataset to only occurrences within a certain age-range | constrainAges constrainAges,multiplyAges multiplyAges |
| Cull rare taxa and depauperate samples | cullMatrix cullMatrix,errorMatrix,culltaxa,cullSamples,occurrencesFlag,diversityFlag,softCull,softTaxa,softSamples |
| Downloads paleogeographic maps | downloadPaleogeography |
| Download Occurrences from the Paleobiology Database | downloadPBDB |
| Download Shapefile of Places | downloadPlaces trueWOF |
| Download geologic timescale | downloadTime |
| Download fixed-latitude equal-area grid | fixedLatitude |
| Multiplicative Diversity Partitioning | completeTurnovers multiplicativeBeta multiplicativeBeta,completeTurnovers,notEndemic notEndemic |
| Create a matrix of presences and absences | presenceMatrix |
| Additive Diversity Partitioning functions | meanAlpha sampleBeta taxonAlpha taxonAlpha,meanAlpha,taxonBeta,sampleBeta,totalGamma taxonBeta totalBeta totalGamma |