cranhaven
. See also theR-universe documentation.Package: scCAN 1.0.5
scCAN: Single-Cell Clustering using Autoencoder and Network Fusion
A single-cell Clustering method using 'Autoencoder' and Network fusion ('scCAN') Bang Tran (2022) <doi:10.1038/s41598-022-14218-6> for segregating the cells from the high-dimensional 'scRNA-Seq' data. The software automatically determines the optimal number of clusters and then partitions the cells in a way such that the results are robust to noise and dropouts. 'scCAN' is fast and it supports Windows, Linux, and Mac OS.
Authors:
scCAN_1.0.5.tar.gz
scCAN_1.0.5.zip(r-4.5)scCAN_1.0.5.zip(r-4.4)scCAN_1.0.5.zip(r-4.3)
scCAN_1.0.5.tgz(r-4.5-any)scCAN_1.0.5.tgz(r-4.4-any)scCAN_1.0.5.tgz(r-4.3-any)
scCAN_1.0.5.tar.gz(r-4.5-noble)scCAN_1.0.5.tar.gz(r-4.4-noble)
scCAN_1.0.5.tgz(r-4.4-emscripten)scCAN_1.0.5.tgz(r-4.3-emscripten)
scCAN.pdf |scCAN.html✨
scCAN/json (API)
# Install 'scCAN' in R: |
install.packages('scCAN', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues
- SCE - SCE
Last updated 6 days agofrom:b846b2c7fa (on package/scCAN). Checks:9 OK. Indexed: no.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 14 2025 |
R-4.5-win | OK | Mar 16 2025 |
R-4.5-mac | OK | Mar 16 2025 |
R-4.5-linux | OK | Mar 14 2025 |
R-4.4-win | OK | Mar 16 2025 |
R-4.4-mac | OK | Mar 16 2025 |
R-4.4-linux | OK | Mar 14 2025 |
R-4.3-win | OK | Mar 16 2025 |
R-4.3-mac | OK | Mar 16 2025 |
Exports:adjustedRandIndexcalculate_celltype_probcurate_markersget_cluster_markersscCAN
Dependencies:BHbitbit64callrcliclustercodetoolscolorspacecorocpp11descdoParalleldqrngfarverFNNforeachglueigraphirlbaiteratorsjsonlitelabelinglatticelifecyclemagrittrMatrixmatrixStatsmunsellpkgconfigprocessxpspurrrR6RColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppParallelRcppProgressRhpcBLASctlrlangRSpectrasafetensorsscalesscDHAsitmotorchuwotvctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
adjustedRandIndex | adjustedRandIndex |
calculate_celltype_prob | calculate_celltype_prob |
curate_markers | curate_markers |
find_markers | find_markers |
find_specific_marker | find_specific_marker |
get_cluster_markers | get_cluster_markers |
scCAN | scCAN |
SCE | SCE |