This package is considered a duplicate. The official version of this package is found at:https://barakbri.r-universe.dev/repfdr

Package: repfdr 1.2.3

Ruth Heller

repfdr: Replicability Analysis for Multiple Studies of High Dimension

Estimation of Bayes and local Bayes false discovery rates for replicability analysis (Heller & Yekutieli, 2014 <doi:10.1214/13-AOAS697> ; Heller at al., 2015 <doi:10.1093/bioinformatics/btu434>).

Authors:Ruth Heller [cre, aut], Shachar Kaufman [aut], Shay Yaacoby [aut], David Israeli [aut], Barak Brill [aut], Daniel Yekutieli [aut], Stephen Turner [cph]

repfdr_1.2.3.tar.gz
repfdr_1.2.3.zip(r-4.7-x86_64)repfdr_1.2.3.zip(r-4.7-arm64)repfdr_1.2.3.zip(r-4.6-x86_64)repfdr_1.2.3.zip(r-4.6-arm64)repfdr_1.2.3.zip(r-4.5-x86_64)
repfdr_1.2.3.tgz(r-4.6-x86_64)repfdr_1.2.3.tgz(r-4.6-arm64)repfdr_1.2.3.tgz(r-4.5-x86_64)repfdr_1.2.3.tgz(r-4.5-arm64)
repfdr_1.2.3.tar.gz(r-4.7-arm64)repfdr_1.2.3.tar.gz(r-4.7-x86_64)repfdr_1.2.3.tar.gz(r-4.6-arm64)repfdr_1.2.3.tar.gz(r-4.6-x86_64)
repfdr_1.2.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
repfdr/json (API)

# Install 'repfdr' in R:

install.packages('repfdr', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/barakbri/repfdr/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

bz_sim - Simulated data set - input objects to main function
hmat_sim - Simulated data set - indicators of association status matrix
pbz_sim - Simulated data set - input objects to main function
Pi - Estimation of the prior probabilities for each association status vector.
SNPlocations - Three GWAS studies SNPs locations and data
zmat_sim - Simulated data set

On CRAN:

archived packages r-universe cpp

3.98 score 5 stars 19 scripts 370 downloads 2 mentions 8 exports 1 dependencies

Last updated from:902187b73d (on package/repfdr). Checks:13 NOTE, 2 OK. Indexed: no.

Target	Result	Time
linux-devel-arm64	NOTE	85
linux-devel-x86_64	NOTE	107
source / vignettes	OK	166
linux-release-arm64	NOTE	92
linux-release-x86_64	NOTE	98
macos-release-arm64	NOTE	125
macos-release-x86_64	NOTE	191
macos-oldrel-arm64	NOTE	87
macos-oldrel-x86_64	NOTE	175
windows-devel-arm64	NOTE	180
windows-devel-x86_64	NOTE	142
windows-release-arm64	NOTE	171
windows-release-x86_64	NOTE	142
windows-oldrel-x86_64	NOTE	100
wasm-release	OK	88

Exports:em.control hconfigs ldr manhattan piem repfdr twosided.PValues.tobins ztobins

Dependencies:Rcpp

repfdr: Package for Replicability Analysis for Multiple Studies of High Dimension

Rendered fromrepfdr.pdf.asisusingR.rsp::asis

Last update: 2026-10-12
Started: 2026-10-12

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Three GWAS studies - input objects to main function	binned_zmat bz pbz
Simulated data set - input objects to main function	binned_zmat_sim bz_sim pbz_sim
Control Parameters for the EM algorithm	em.control
Enumeration of all possible vectors of association status.	hconfigs
Simulated data set - indicators of association status matrix	hmat_sim
Estimation of posterior probabilities for the vectors of association status	ldr
Estimation of the prior probabilities for each association status vector.	Pi piem
Bayes and local Bayes false discovery rate estimation for replicability analysis	manhattan repfdr
Three GWAS studies SNPs locations and data	SNPlocations
Binning of two sided P-Values and estimation of the probabilities in each bin for the null and non-null states.	twosided.PValues.tobins
Simulated data set	zmat_sim
Binning of z-scores and estimation of the probabilities in each bin for the null and non-null states.	ztobins