Package: mpwR 0.1.5

Oliver Kardell

mpwR: Standardized Comparison of Workflows in Mass Spectrometry-Based Bottom-Up Proteomics

Useful functions to analyze proteomic workflows including number of identifications, data completeness, missed cleavages, quantitative and retention time precision etc. Various software outputs are supported such as 'ProteomeDiscoverer', 'Spectronaut', 'DIA-NN' and 'MaxQuant'.

Authors:Oliver Kardell [aut, cre]

mpwR_0.1.5.tar.gz
mpwR_0.1.5.zip(r-4.5)mpwR_0.1.5.zip(r-4.4)mpwR_0.1.5.zip(r-4.3)
mpwR_0.1.5.tgz(r-4.5-any)mpwR_0.1.5.tgz(r-4.4-any)mpwR_0.1.5.tgz(r-4.3-any)
mpwR_0.1.5.tar.gz(r-4.5-noble)mpwR_0.1.5.tar.gz(r-4.4-noble)
mpwR_0.1.5.tgz(r-4.4-emscripten)mpwR_0.1.5.tgz(r-4.3-emscripten)
mpwR.pdf |mpwR.html✨
mpwR/json (API)
NEWS

# Install 'mpwR' in R:
install.packages('mpwR', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues

On CRAN:

Conda:

archivedpackagesr-universe

4.00 score 5 stars 292 downloads 22 exports 76 dependencies

Last updated 5 days agofrom:6826986e91 (on package/mpwR). Checks:6 OK, 3 ERROR. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 10 2025
R-4.5-winERRORMar 12 2025
R-4.5-macERRORMar 12 2025
R-4.5-linuxERRORMar 12 2025
R-4.4-winOKMar 11 2025
R-4.4-macOKMar 11 2025
R-4.4-linuxOKMar 10 2025
R-4.3-winOKMar 11 2025
R-4.3-macOKMar 11 2025

Exports:create_exampleget_CV_LFQ_pepget_CV_LFQ_pgget_CV_RTget_DC_Reportget_ID_Reportget_MC_Reportget_summary_Reportget_Upset_listload_experimental_designplot_CV_densityplot_DC_barplotplot_DC_stacked_barplotplot_ID_barplotplot_ID_boxplotplot_MC_barplotplot_MC_stacked_barplotplot_radarchartplot_Upsetprepare_mpwRwrite_experimental_designwrite_generic_template

Dependencies:askpassbase64encbslibcachemclicolorspacecomprehenrcpp11crosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapflowTraceRfontawesomeforcatsfsgenericsggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplotlyplyrpromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalesstringistringrsystibbletidyrtidyselecttinytexUpSetRutf8vctrsviridisLitewithrxfunyaml

Import

Rendered fromImport.Rmdusingknitr::rmarkdownon Mar 10 2025.

Last update: 2025-03-09
Started: 2025-03-09

Output Explanations

Rendered fromOutput_Explanations.Rmdusingknitr::rmarkdownon Mar 10 2025.

Last update: 2025-03-09
Started: 2025-03-09

Requirements

Rendered fromRequirements.Rmdusingknitr::rmarkdownon Mar 10 2025.

Last update: 2025-03-09
Started: 2025-03-09

Workflow

Rendered fromWorkflow.Rmdusingknitr::rmarkdownon Mar 10 2025.

Last update: 2025-03-09
Started: 2025-03-09