Package: kibior 0.1.1

Régis Ongaro-Carcy

kibior: A Simple Data Management and Sharing Tool

An interface to store, retrieve, search, join and share datasets, based on Elasticsearch (ES) API. As a decentralized, FAIR and collaborative search engine and database effort, it proposes a simple push/pull/search mechanism only based on ES, a tool which can be deployed on nearly any hardware. It is a high-level R-ES binding to ease data usage using 'elastic' package (S. Chamberlain (2020)) <https://docs.ropensci.org/elastic/>, extends joins from 'dplyr' package (H. Wickham et al. (2020)) <https://dplyr.tidyverse.org/> and integrates specific biological format importation with Bioconductor packages such as 'rtracklayer' (M. Lawrence and al. (2009) <doi:10.1093/bioinformatics/btp328>) <http://bioconductor.org/packages/rtracklayer>, 'Biostrings' (H. Pagès and al. (2020) <doi:10.18129/B9.bioc.Biostrings>) <http://bioconductor.org/packages/Biostrings>, and 'Rsamtools' (M. Morgan and al. (2020) <doi:10.18129/B9.bioc.Rsamtools>) <http://bioconductor.org/packages/Rsamtools>, but also a long list of more common ones with 'rio' (C-h. Chan and al. (2018)) <https://cran.r-project.org/package=rio>.

Authors:Régis Ongaro-Carcy [aut, cre, ctb], Arnaud Droit [fnd]

kibior_0.1.1.tar.gz
kibior_0.1.1.zip(r-4.5)kibior_0.1.1.zip(r-4.4)
kibior_0.1.1.tgz(r-4.5-any)kibior_0.1.1.tgz(r-4.4-any)
kibior_0.1.1.tar.gz(r-4.5-noble)kibior_0.1.1.tar.gz(r-4.4-noble)
kibior_0.1.1.tgz(r-4.3-emscripten)
kibior.pdf |kibior.html
kibior/json (API)

# Install 'kibior' in R:
install.packages('kibior', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/regisoc/kibior/issues

On CRAN:

Conda:

dataimportdatarepresentationthirdpartyclientarchivedpackagesr-universe

3.70 score 5 stars 204 downloads 1 exports 94 dependencies

Last updated 1 days agofrom:85ddf41960 (on package/kibior). Checks:1 OK, 6 NOTE. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKApr 01 2025
R-4.5-winNOTEApr 01 2025
R-4.5-macNOTEApr 01 2025
R-4.5-linuxNOTEApr 01 2025
R-4.4-winNOTEApr 01 2025
R-4.4-macNOTEApr 01 2025
R-4.4-linuxNOTEApr 01 2025

Exports:Kibior

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopscellrangerclicliprcodetoolscpp11crayoncrulcurldata.tableDelayedArraydplyrelasticfansiforcatsforeignformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehavenhmshttpcodehttrIRangesjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6RcppRCurlreadrreadxlrematchrestfulrRhtslibriorjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttriebeardtzdbUCSC.utilsurltoolsutf8vctrsvroomwithrwritexlXMLXVectoryaml

KibioR - Biological examples

Rendered frombiological_examples_fixed.Rmdusingknitr::rmarkdownon Apr 01 2025.

Last update: 2025-04-01
Started: 2025-04-01

KibioR - Introduction

Rendered fromintroduction_fixed.Rmdusingknitr::rmarkdownon Apr 01 2025.

Last update: 2025-04-01
Started: 2025-04-01

Readme and manuals

Help Manual

Help pageTopics
KibioR, an Kibio and Elasticsearch data manipulation package.Kibior kibior
Kibior equals operator==.KibiorOperators Kibior equals operator
Kibior not-equals operator!=.KibiorOperators Kibior not-equals operator
Static - initiate a direct instance to Kibio public repositoryStatic - initiate a direct instance to Kibio public repository
Static - Kibior is instanceStatic - Kibior is instance
Static - Tests if packages are installedStatic - Tests if packages are installed