Package: hJAM 1.0.0

Lai Jiang

hJAM: Hierarchical Joint Analysis of Marginal Summary Statistics

Provides functions to implement a hierarchical approach which is designed to perform joint analysis of summary statistics using the framework of Mendelian Randomization or transcriptome analysis. Reference: Lai Jiang, Shujing Xu, Nicholas Mancuso, Paul J. Newcombe, David V. Conti (2020). "A Hierarchical Approach Using Marginal Summary Statistics for Multiple Intermediates in a Mendelian Randomization or Transcriptome Analysis." <bioRxiv><doi:10.1101/2020.02.03.924241>.

Authors:Lai Jiang <[email protected]>

hJAM_1.0.0.tar.gz
hJAM_1.0.0.zip(r-4.7)hJAM_1.0.0.zip(r-4.6)hJAM_1.0.0.zip(r-4.5)
hJAM_1.0.0.tgz(r-4.6-any)hJAM_1.0.0.tgz(r-4.5-any)
hJAM_1.0.0.tar.gz(r-4.7-any)hJAM_1.0.0.tar.gz(r-4.6-any)
hJAM_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
hJAM/json (API)

# Install 'hJAM' in R:
install.packages('hJAM', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lailylajiang/hjam/issues

Datasets:
  • betas.Gy - Example beta list of hJAM
  • conditional_A - Example conditional A matrix of hJAM
  • Gl - Example reference data of hJAM
  • marginal_A - Example marginal A matrix of hJAM
  • SNPs_info - Example SNPs' information of hJAM

On CRAN:

Conda:

archivedpackagesr-universe

3.40 score 5 stars 8 scripts 185 downloads 7 exports 79 dependencies

Last updated from:11b59d5682 (on package/hJAM). Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK212
source / vignettesOK204
linux-release-x86_64OK144
macos-release-arm64OK114
macos-oldrel-arm64OK101
windows-develOK121
windows-releaseOK108
windows-oldrelOK113
wasm-releaseOK111

Exports:get_cond_Aget_cond_alphahJAM_eggerhJAM_lnregoutput.formatSNPs_heatmapSNPs_scatter_plot

Dependencies:abindbackportsbootbroomcarcarDataclicolorspacecorrplotcowplotcpp11DerivdoBydplyrfarverforecastFormulafracdiffgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtableisobandlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqamodelrnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpolynompurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2rlangrstatixS7scalesSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo

hJAM Vignette

Lai Jiang

Rendered fromhJAM_vignette.Rmdusingknitr::rmarkdownon Jun 11 2026.

Last update: 2026-06-11
Started: 2026-06-11