Package: greatR 2.0.0

Ruth Kristianingsih

greatR: Gene Registration from Expression and Time-Courses in R

A tool for registering (aligning) gene expression profiles between reference and query data.

Authors:Ruth Kristianingsih [aut, cre]

greatR_2.0.0.tar.gz
greatR_2.0.0.zip(r-4.5)greatR_2.0.0.zip(r-4.4)greatR_2.0.0.zip(r-4.3)
greatR_2.0.0.tgz(r-4.5-any)greatR_2.0.0.tgz(r-4.4-any)greatR_2.0.0.tgz(r-4.3-any)
greatR_2.0.0.tar.gz(r-4.5-noble)greatR_2.0.0.tar.gz(r-4.4-noble)
greatR_2.0.0.tgz(r-4.4-emscripten)greatR_2.0.0.tgz(r-4.3-emscripten)
greatR.pdf |greatR.html✨
greatR/json (API)
NEWS

# Install 'greatR' in R:
install.packages('greatR', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ruthkr/greatr/issues

Pkgdown site:https://ruthkr.github.io

On CRAN:

Conda:

archivedpackagesr-universe

4.00 score 5 stars 284 downloads 3 exports 43 dependencies

Last updated 13 days agofrom:0ce0262462 (on package/greatR). Checks:9 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 19 2025
R-4.5-winOKMar 19 2025
R-4.5-macOKMar 19 2025
R-4.5-linuxOKMar 19 2025
R-4.4-winOKMar 19 2025
R-4.4-macOKMar 19 2025
R-4.4-linuxOKMar 19 2025
R-4.3-winOKMar 19 2025
R-4.3-macOKMar 19 2025

Exports:calculate_distanceget_approximate_stretchregister

Dependencies:clicodetoolscolorspacedata.tabledigestfansifarverfurrrfutureggplot2globalsgluegtableisobandlabelinglatticelifecyclelistenvmagrittrMASSMatrixmgcvmunsellneldermeadnlmeoptimbaseoptimizationoptimsimplexparallellypatchworkpillarpkgconfigpurrrR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr

Input data requirements

Rendered fromdata-requirement.Rmdusingknitr::rmarkdownon Mar 19 2025.

Last update: 2025-03-18
Started: 2025-03-18

Processing results

Rendered fromprocess-results.Rmdusingknitr::rmarkdownon Mar 19 2025.

Last update: 2025-03-18
Started: 2025-03-18

Registering data

Rendered fromregister-data.Rmdusingknitr::rmarkdownon Mar 19 2025.

Last update: 2025-03-18
Started: 2025-03-18

Registering data without optimisation

Rendered fromregister-data-manually.Rmdusingknitr::rmarkdownon Mar 19 2025.

Last update: 2025-03-18
Started: 2025-03-18