Package: fasjem 1.1.2

Beilun Wang

fasjem: A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models

This is an R implementation of "A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models" (FASJEM). The FASJEM algorithm can be used to estimate multiple related precision matrices. For instance, it can identify context-specific gene networks from multi-context gene expression datasets. By performing data-driven network inference from high-dimensional and heterogonous data sets, this tool can help users effectively translate aggregated data into knowledge that take the form of graphs among entities. Please run demo(fasjem) to learn the basic functions provided by this package. For more details, please see <http://proceedings.mlr.press/v54/wang17e/wang17e.pdf>.

Authors:Beilun Wang [aut, cre], Yanjun Qi [aut]

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fasjem.pdf |fasjem.html
fasjem/json (API)

# Install 'fasjem' in R:
install.packages('fasjem', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/qdata/jem/issues

Datasets:
  • exampleData - A simulated toy dataset that includes 2 data matrices (about 2 related tasks).

On CRAN:

archivedpackagesr-universe

1.70 score 5 stars 184 downloads 6 exports 11 dependencies

Last updated 25 days agofrom:14f2721e6e (on package/fasjem). Checks:8 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 26 2025
R-4.5-winOKJan 26 2025
R-4.5-macOKJan 26 2025
R-4.5-linuxOKJan 26 2025
R-4.4-winOKJan 26 2025
R-4.4-macOKJan 26 2025
R-4.3-winOKJan 26 2025
R-4.3-macOKJan 26 2025

Exports:fasjemnet.degreenet.edgesnet.hubsnet.neighborsplot.fasjem

Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs