Package: ccml 1.4.0

Chuanxing Li

ccml: Consensus Clustering for Different Sample Coverage Data

Consensus clustering, also called meta-clustering or cluster ensembles, has been increasingly used in clinical data. Current consensus clustering methods tend to ensemble a number of different clusters from mathematical replicates with similar sample coverage. As the fact of common variety of sample coverage in the real-world data, a new consensus clustering strategy dealing with such biological replicates is required. This is a two-step consensus clustering package, which is used to input multiple predictive labels with different sample coverage (missing labels).

Authors:Chuanxing Li [aut, cre], Meng Zhou [aut]

ccml_1.4.0.tar.gz
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ccml.pdf |ccml.html
ccml/json (API)
NEWS

# Install 'ccml' in R:
install.packages('ccml', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues

Datasets:

On CRAN:

archivedpackagesr-universe

1.70 score 5 stars 298 downloads 5 exports 127 dependencies

Last updated 18 days agofrom:0d4dc0b120 (on package/ccml). Checks:6 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 02 2025
R-4.5-winOKFeb 02 2025
R-4.5-macOKFeb 02 2025
R-4.5-linuxOKFeb 02 2025
R-4.4-winOKFeb 02 2025
R-4.4-macOKFeb 02 2025

Exports:callNCWccmlplotCompareCWrandConsensusMatrixspectralClusteringAffinity

Dependencies:abindade4ALLalluvialassertthatbase64encBiobaseBiocGenericsBiocManagerbitbit64bslibcachemclassclassIntclicliprclueclusterclusterSimclvclValidcodetoolscolorspacecombinatcommonmarkConsensusClusterPluscpp11crayondiceRdigestdoParalleldplyre1071ExPositionfansifarverfastmapfontawesomeforcatsforeachfsgenericsggplot2gluegridBasegtablegtoolshardhathavenhighrhmshtmltoolshttpuvinfotheoisobanditeratorsjquerylibjsonliteKernSmoothklaRlabelinglabelledlaterlatticelifecyclemagrittrMASSMatrixmclustmemoisemgcvmimeminiUImunsellnlmeNMFpillarpixmappkgconfigplyrprettyGraphsprettyunitsprogresspromisesproxypurrrquestionrR.cacheR.methodsS3R.ooR.utilsR6RankAggregrappdirsRColorBrewerRcppRcppArmadilloreadrregistryreshape2rlangrngtoolsrprojrootrstudioapisassscalesshinySNFtoolsourcetoolsspsparsevctrsstringistringrstylertibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrxfunxtableyardstick