Package: PvSTATEM 0.2.1

Tymoteusz Kwiecinski

PvSTATEM: Reading, Quality Control and Preprocessing of MBA (Multiplex Bead Assay) Data

Speeds up the process of loading raw data from MBA (Multiplex Bead Assay) examinations, performs quality control checks, and automatically normalises the data, preparing it for more advanced, downstream tasks. The main objective of the package is to create a simple environment for a user, who does not necessarily have experience with R language. The package is developed within the project of the same name - 'PvSTATEM', which is an international project aiming for malaria elimination.

Authors:Tymoteusz Kwiecinski [aut, cre], Jakub Grzywaczewski [aut], Mateusz Nizwantowski [aut], Przemyslaw Biecek [ths], Nuno Sepulveda [ths]

PvSTATEM_0.2.1.tar.gz
PvSTATEM_0.2.1.zip(r-4.5)PvSTATEM_0.2.1.zip(r-4.4)PvSTATEM_0.2.1.zip(r-4.3)
PvSTATEM_0.2.1.tgz(r-4.5-any)PvSTATEM_0.2.1.tgz(r-4.4-any)PvSTATEM_0.2.1.tgz(r-4.3-any)
PvSTATEM_0.2.1.tar.gz(r-4.5-noble)PvSTATEM_0.2.1.tar.gz(r-4.4-noble)
PvSTATEM_0.2.1.tgz(r-4.4-emscripten)PvSTATEM_0.2.1.tgz(r-4.3-emscripten)
PvSTATEM.pdf |PvSTATEM.html✨
PvSTATEM/json (API)

# Install 'PvSTATEM' in R:
install.packages('PvSTATEM', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mini-pw/pvstatem/issues

Pkgdown site:https://mini-pw.github.io

On CRAN:

archivedpackagesr-universe

3.40 score 5 stars 7 scripts 567 downloads 21 exports 60 dependencies

Last updated 4 days agofrom:d972ae14ef (on package/PvSTATEM). Checks:8 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 17 2025
R-4.5-winOKFeb 19 2025
R-4.5-macOKFeb 19 2025
R-4.5-linuxOKFeb 17 2025
R-4.4-winOKFeb 19 2025
R-4.4-macOKFeb 19 2025
R-4.3-winOKFeb 19 2025
R-4.3-macOKFeb 19 2025

Exports:create_standard_curve_model_analytegenerate_levey_jennings_reportgenerate_plate_reportget_nmfiis_valid_data_typeis_valid_sample_typePlateBuilderplot_countsplot_layoutplot_levey_jenningsplot_mfi_for_analyteplot_standard_curve_analyteplot_standard_curve_analyte_with_modelplot_standard_curve_stackedprocess_dirprocess_fileprocess_plateread_layout_dataread_luminex_dataread_xponent_formattranslate_sample_names_to_sample_types

Dependencies:bitbit64cellrangerclicliprcolorspacecpp11crayondplyrfansifarverfsgenericsggplot2ggrepelgluegtablehmsisobandjsonlitelabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmunsellnlmenplrpillarpkgconfigpngprettyunitsprogressR.methodsS3R.ooR.utilsR6RColorBrewerRcppreadrreadxlrematchrlangscalesstringistringrsvglitesystemfontstibbletidyselecttimechangetzdbutf8vctrsviridisLitevroomwithr

Basic PvSTATEM functionalities

Tymoteusz Kwieciński

Rendered fromexample_script.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2025-02-17
Started: 2025-02-17