Package: PEACH 0.1.1

Jinyan Chan

PEACH: Pareto Enrichment Analysis for Combining Heterogeneous Datasets

A meta gene set analysis tool developed based on principles of Pareto dominance (William B T Mock (2011) <doi:10.1007/978-1-4020-9160-5_341>). It is designed to combine gene set analysis p-values from multiple transcriptome datasets (e.g., microarray and RNA-Seq). The novel Pareto method for p-value combination allows PEACH to properly model heterogeneity and correlation in Omics datasets.

Authors:Jinyan Chan [aut, cre], Jinghua Gu [aut, cre]

PEACH_0.1.1.tar.gz
PEACH_0.1.1.zip(r-4.5)PEACH_0.1.1.zip(r-4.4)
PEACH_0.1.1.tgz(r-4.5-any)PEACH_0.1.1.tgz(r-4.4-any)
PEACH_0.1.1.tar.gz(r-4.5-noble)PEACH_0.1.1.tar.gz(r-4.4-noble)
PEACH_0.1.1.tgz(r-4.4-emscripten)PEACH_0.1.1.tgz(r-4.3-emscripten)
PEACH.pdf |PEACH.html✨
PEACH/json (API)

# Install 'PEACH' in R:
install.packages('PEACH', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues

Datasets:
  • KEGG - KEGG pathways
  • TCGA.input - A sample of 16 cancers gene differential expression analysis t statistic score data

On CRAN:

Conda:

archivedpackagesr-universe

2.70 score 5 stars 137 downloads 17 mentions 1 exports 31 dependencies

Last updated 23 hours agofrom:693f14f21b (on package/PEACH). Checks:7 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 25 2025
R-4.5-winOKMar 25 2025
R-4.5-macOKMar 25 2025
R-4.5-linuxOKMar 25 2025
R-4.4-winOKMar 25 2025
R-4.4-macOKMar 25 2025
R-4.4-linuxOKMar 25 2025

Exports:peach

Dependencies:BiobaseBiocGenericscodetoolsDEoptimRgenericslatticeMASSmathjaxrMatrixMatrixModelsmetapmnormtmultcompmulttestmutossmvtnormnumDerivplotrixqqconfquantregrbibutilsRcppRdpackrobustbasesandwichsnSparseMsurvivalTFisherTH.datazoo