Package: MVR 1.33.0
Jean-Eudes Dazard
MVR: Mean-Variance Regularization
This is a non-parametric method for joint adaptive mean-variance regularization and variance stabilization of high-dimensional data. It is suited for handling difficult problems posed by high-dimensional multivariate datasets (p >> n paradigm). Among those are that the variance is often a function of the mean, variable-specific estimators of variances are not reliable, and tests statistics have low powers due to a lack of degrees of freedom. Key features include: (i) Normalization and/or variance stabilization of the data, (ii) Computation of mean-variance-regularized t-statistics (F-statistics to follow), (iii) Generation of diverse diagnostic plots, (iv) Computationally efficient implementation using C/C++ interfacing and an option for parallel computing to enjoy a faster and easier experience in the R environment.
Authors:
MVR_1.33.0.tar.gz
MVR_1.33.0.zip(r-4.7-x86_64)MVR_1.33.0.zip(r-4.7-arm64)MVR_1.33.0.zip(r-4.6-x86_64)MVR_1.33.0.zip(r-4.6-arm64)MVR_1.33.0.zip(r-4.5-x86_64)
MVR_1.33.0.tgz(r-4.6-x86_64)MVR_1.33.0.tgz(r-4.6-arm64)MVR_1.33.0.tgz(r-4.5-x86_64)MVR_1.33.0.tgz(r-4.5-arm64)
MVR_1.33.0.tar.gz(r-4.7-arm64)MVR_1.33.0.tar.gz(r-4.7-x86_64)MVR_1.33.0.tar.gz(r-4.6-arm64)MVR_1.33.0.tar.gz(r-4.6-x86_64)
MVR_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MVR/json (API)
| # Install 'MVR' in R: |
| install.packages('MVR', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jedazard/mvr/issues
Last updated from:76fcd3e5b9 (on package/MVR). Checks:13 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 76 | ||
| linux-devel-x86_64 | NOTE | 91 | ||
| source / vignettes | OK | 149 | ||
| linux-release-arm64 | NOTE | 77 | ||
| linux-release-x86_64 | NOTE | 91 | ||
| macos-release-arm64 | NOTE | 106 | ||
| macos-release-x86_64 | NOTE | 190 | ||
| macos-oldrel-arm64 | NOTE | 106 | ||
| macos-oldrel-x86_64 | NOTE | 268 | ||
| windows-devel-arm64 | NOTE | 195 | ||
| windows-devel-x86_64 | NOTE | 102 | ||
| windows-release-arm64 | NOTE | 176 | ||
| windows-release-x86_64 | NOTE | 119 | ||
| windows-oldrel-x86_64 | NOTE | 75 | ||
| wasm-release | OK | 72 |
Exports:cluster.diagnosticmvrMVR.newsmvrt.testnormalization.diagnosticstabilization.diagnostictarget.diagnostic
Dependencies:statmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Mean-Variance Regularization Package | MVR |
| Function for Plotting Summary Cluster Diagnostic Plots | cluster.diagnostic |
| Function for Mean-Variance Regularization and Variance Stabilization | mvr |
| Function to Display the NEWS File | MVR.news |
| Function for Computing Mean-Variance Regularized T-test Statistic and Its Significance | mvrt.test |
| Function for Plotting Summary Normalization Diagnostic Plots | normalization.diagnostic |
| Real Proteomics Dataset | Real |
| Function for Plotting Summary Variance Stabilization Diagnostic Plots | stabilization.diagnostic |
| Multi-Groups Synthetic Dataset | Synthetic |
| Function for Plotting Summary Target Moments Diagnostic Plots | target.diagnostic |