This package is considered a duplicate. The official version of this package is found at:https://cran.r-universe.dev/INCATome

Package: INCATome 1.0

Thomas Sbarrato

INCATome: Internal Control Analysis of Translatome Studies by Microarrays

Data analysis, normalisation and differential expression for Translatome studies by microarrays (T Sbarrato et al. RNA. 2017 Aug 25; <doi:10.1261/rna.060525.116>).

Authors:Sbarrato T. [cre,aut], Spriggs R.V. [cre,aut], Wilson L. [ctb], Jones C. [ctb], Dudek K. [ctb], Bastide A. [ctb], Pichon X. [ctb], Poyry T. [ctb] and Willis A.E. [ctb]

INCATome_1.0.tar.gz
INCATome_1.0.zip(r-4.5)INCATome_1.0.zip(r-4.4)INCATome_1.0.zip(r-4.3)
INCATome_1.0.tgz(r-4.5-any)INCATome_1.0.tgz(r-4.4-any)INCATome_1.0.tgz(r-4.3-any)
INCATome_1.0.tar.gz(r-4.5-noble)INCATome_1.0.tar.gz(r-4.4-noble)
INCATome_1.0.tgz(r-4.4-emscripten)INCATome_1.0.tgz(r-4.3-emscripten)
INCATome.pdf |INCATome.html✨
INCATome/json (API)

# Install 'INCATome' in R:

install.packages('INCATome', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues

Datasets:

INCATomeData - Translatome microarray dataset simulated from experimentally acquired translatome of Hela cells.

On CRAN:

archived packages r-universe

1.70 score 5 stars 124 downloads 7 exports 56 dependencies

Last updated 7 days agofrom:46b5548094 (on package/INCATome). Checks:9 OK. Indexed: no.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 25 2025
R-4.5-win	OK	Mar 25 2025
R-4.5-mac	OK	Mar 25 2025
R-4.5-linux	OK	Mar 25 2025
R-4.4-win	OK	Mar 25 2025
R-4.4-mac	OK	Mar 25 2025
R-4.4-linux	OK	Mar 25 2025
R-4.3-win	OK	Mar 25 2025
R-4.3-mac	OK	Mar 25 2025

Exports:INCA.DEG INCA.DyeSwap INCA.MAPlot INCA.NormIC INCA.NormSI INCA.PreProcess INCA.SpikePlot

Dependencies:annotate AnnotationDbi askpass Biobase BiocGenerics Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI fastmap genefilter generics GenomeInfoDb GenomeInfoDbData glue gmp httr IRanges jsonlite KEGGREST lattice lifecycle limma MASS Matrix MatrixGenerics matrixStats memoise mime multtest openssl pkgconfig plogr png R6 RankProd rlang Rmpfr RSQLite S4Vectors scrime siggenes statmod survival sys UCSC.utils vctrs XML xtable XVector

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
INCATome Deregulated Genes Identification	INCA.DEG
DyeSwap Method for two-color microarray data	INCA.DyeSwap
MA Plot for Array data, with optional highlighting of set of genes	INCA.MAPlot
INCATome Normalisation by Internal Control Probes	INCA.NormIC
INCATome Normalisation by Spike In Probes	INCA.NormSI
Background Correction of two-color microarray data	INCA.PreProcess
Linearity Plot for Spike In Probes	INCA.SpikePlot
Internal Control Analysis of Translatome Studies by Microarrays	INCATome-package INCATome
Translatome microarray dataset simulated from experimentally acquired translatome of Hela cells.	INCATomeData