This package is considered a duplicate. The official version of this package is found at:https://cran.r-universe.dev/IBDsim

Package: IBDsim 0.9-8

Magnus Dehli Vigeland

IBDsim: Simulation of Chromosomal Regions Shared by Family Members

Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Kong et. al (2010) <doi:10.1038/nature09525>), phased chromosomes are simulated for all pedigree members, either by unconditional gene dropping or conditional on a specified IBD pattern. Additional functions provide summaries and further analysis of the simulated genomes.

Authors:Magnus Dehli Vigeland

IBDsim_0.9-8.tar.gz
IBDsim_0.9-8.zip(r-4.5)IBDsim_0.9-8.zip(r-4.4)IBDsim_0.9-8.zip(r-4.3)
IBDsim_0.9-8.tgz(r-4.5-x86_64)IBDsim_0.9-8.tgz(r-4.5-arm64)IBDsim_0.9-8.tgz(r-4.4-x86_64)IBDsim_0.9-8.tgz(r-4.4-arm64)IBDsim_0.9-8.tgz(r-4.3-x86_64)IBDsim_0.9-8.tgz(r-4.3-arm64)
IBDsim_0.9-8.tar.gz(r-4.5-noble)IBDsim_0.9-8.tar.gz(r-4.4-noble)
IBDsim_0.9-8.tgz(r-4.4-emscripten)IBDsim_0.9-8.tgz(r-4.3-emscripten)
IBDsim.pdf |IBDsim.html✨
IBDsim/json (API)
NEWS

# Install 'IBDsim' in R:

install.packages('IBDsim', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues

Datasets:

DecodeMap - Decode recombination map
dominant1 - Autosomal dominant pedigree

On CRAN:

archived packages r-universe

2.48 score 5 stars 242 downloads 6 mentions 6 exports 17 dependencies

Last updated 8 days agofrom:5ceab74a44 (on package/IBDsim). Checks:8 OK, 4 NOTE. Indexed: no.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 24 2025
R-4.5-win-x86_64	NOTE	Mar 24 2025
R-4.5-mac-x86_64	NOTE	Mar 24 2025
R-4.5-mac-aarch64	NOTE	Mar 24 2025
R-4.5-linux-x86_64	NOTE	Mar 24 2025
R-4.4-win-x86_64	OK	Mar 24 2025
R-4.4-mac-x86_64	OK	Mar 24 2025
R-4.4-mac-aarch64	OK	Mar 24 2025
R-4.4-linux-x86_64	OK	Mar 24 2025
R-4.3-win-x86_64	OK	Mar 24 2025
R-4.3-mac-x86_64	OK	Mar 24 2025
R-4.3-mac-aarch64	OK	Mar 24 2025

Exports:alleleSummary IBDsim oneLocusIBD oneLocusJacquard twoLocusIBD twoLocusJacquard

Dependencies:assertthat digest evaluate generics highr kinship2 knitr lattice Matrix maxLik miscTools paramlink quadprog sandwich xfun yaml zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Allele sharing summary	alleleSummary
Decode recombination map	DecodeMap
Autosomal dominant pedigree	dominant1
IBD simulation	IBDsim
Estimating pairwise IBD coefficients	oneLocusIBD
Estimating Jacquard's condensed identity coefficients	oneLocusJacquard
Estimating two-locus IBD coefficients	twoLocusIBD
Estimating two-locus Jacquard coefficients	twoLocusJacquard