Package: GeoRange 0.1.0

James Boyle Developer

GeoRange: Calculating Geographic Range from Occurrence Data

Calculates and analyzes six measures of geographic range from a set of longitudinal and latitudinal occurrence data. Measures included are minimum convex hull area, minimum spanning tree distance, longitudinal range, latitudinal range, maximum pairwise great circle distance, and number of X by X degree cells occupied.

Authors:James Boyle Developer [aut, cre]

GeoRange_0.1.0.tar.gz
GeoRange_0.1.0.zip(r-4.7-any)GeoRange_0.1.0.zip(r-4.6-any)GeoRange_0.1.0.zip(r-4.5-any)
GeoRange_0.1.0.tar.gz(r-4.7-any)GeoRange_0.1.0.tar.gz(r-4.6-any)
GeoRange_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GeoRange/json (API)

# Install 'GeoRange' in R:
install.packages('GeoRange', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues

Datasets:
  • BivalvePBDB - Occurrence data on bivalves from the Ypresian Data from the Paleobiology Database via the velociraptr package on May 17th, 2017

On CRAN:

Conda:

archivedpackagesr-universe

2.34 score 5 stars 44 scripts 272 downloads 29 exports 18 dependencies

Last updated from:b7374e1495 (on package/GeoRange). Checks:5 NOTE, 2 OK, 2 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
linux-develNOTE113
source / vignettesOK167
linux-releaseNOTE147
macos-releaseFAIL85
macos-oldrelFAIL76
windows-develNOTE73
windows-releaseNOTE77
windows-oldrelNOTE56
wasm-releaseOK115

Exports:CellCountCHullAreaCHullAreaEarthCoordCollapseCoordList_PBDBdeg2radEqualAreaRectangleGCDgcd_hfgcd_vifGeoCorGeoPerformance_SkewCVGeoRange_MultiTaxaGeoRarefaction_MultiTaxaGeoRarefaction_SingleTaxonHorseShoeAreaLatRgLongRgMSTDistMSTDist_FromMatPEE_MultiTaxaPEE_SingleTaxonPlot_RarefactionPlotConvexHullPlotMSTPtsAlgHorseShoePWMatrixRandHorseShoeRandRec

Dependencies:classclassIntDBIe1071KernSmoothlatticemomentsproj4proxyrasterRcpps2sfspterraunitsvelociraptrwk

Readme and manuals

Help Manual

Help pageTopics
Occurrence data on bivalves from the Ypresian Data from the Paleobiology Database via the velociraptr package on May 17th, 2017BivalvePBDB
Calculates degree x degree cell counts of a specified sizeCellCount
Performs Convex Hull area calculationCHullArea
Performs convex hull area calculation from coordinate sets on the Earth's surfaceCHullAreaEarth
Removes duplicate geographic locations and binds coordinates into a single elementCoordCollapse
Creates an occurrence matrix of taxa by coordinates from the Paleobiology DatabaseCoordList_PBDB
Converts degrees to radiansdeg2rad
Create a rectangular shaped distribution with equal area to a given areaEqualAreaRectangle
Calculates the maximum pairwise great circle distance from a set of decimal degree coordinatesGCD
Calculates the geodesic distance between two points specified by latitude and longitude using the Haversine formulagcd_hf
Calculates the geodesic distance between two points specified by latitude/longitude using Vincenty inverse formula for ellipsoidsgcd_vif
Function to calculate the correlation coefficient for pairwise comparisons between geographic range measuresGeoCor
Function to calculate the skewness and coefficient of variance for a set of geographic range calculationsGeoPerformance_SkewCV
Function to tabulate number of occurrences/locations, six geographic range measures, minimum and maximum latitude and longitude for each taxon in a datasetGeoRange_MultiTaxa
Calculates six geographic range measures at resampled a number of time from specified sample sizesGeoRarefaction_MultiTaxa
Calculates six geographic range measures at specified sample sizes for a single taxonGeoRarefaction_SingleTaxon
Prints Hello, world!hello
Function to calcuate the area of a given horseshoe shapeHorseShoeArea
Calculates the latitudinal range in degrees and kilometersLatRg
Calculates the longitudinal range in degrees and kilometers, assuming a latitude of 45 degrees for all points by default. Accounts for the possibility of wrapping around the globe.LongRg
Calculates the minimum spanning tree distance, in kilometers, using Prim's Algorithm [1]MSTDist
Calculates the minimum spanning tree distance, in kilometers, using Prim's Algorithm [1] and a previously calculated pairwsie distance matrixMSTDist_FromMat
Function to compile the PBDB_PEE_SingleTaxon output for a list of taxaPEE_MultiTaxa
Function to calculate PEE [1] matrices for all the geographic range measuresPEE_SingleTaxon
Plots the measured value versus rarefied samples or percent error of estimates (PEE) of a rarefied samples for a geographic range measurePlot_Rarefaction
Plots the minimum convex hull of a set of coordinatesPlotConvexHull
Plots the minimum spanning tree of a set of coordinatesPlotMST
Function to find points along a horseshoe shapePtsAlgHorseShoe
Creates a sparse pairwise distance matrix of a coordinate setPWMatrix
Function to randomly generate points within a horseshoe-shapeRandHorseShoe
Function to randomly generate points within a given rectangular shaped distributionRandRec