Package: BENMMI 4.3-7
Dennis Walvoort
BENMMI: Benthic Multi-Metric Index
Analysis tool for evaluating benthic multimetric indices (BENMMIs). It generates reproducible reports on the analysis of benthic data, e.g., validation and correction of species names, sample pooling, automatic conversion of genus to species names, outlier detection, benthic indicator calculation, optimization of single and multimetric indicators against a pressure gradient, and spatial aggregation of benthic indicators. One of its use cases was the development of a common benthic indicator for <https://www.ospar.org> (publication accepted by Ecological Indicators). See Van Loon et al. (2018) <doi:10.1016/j.ecolind.2017.09.029> for details.
Authors:
BENMMI_4.3-7.tar.gz
BENMMI_4.3-7.zip(r-4.5)BENMMI_4.3-7.zip(r-4.4)BENMMI_4.3-7.zip(r-4.3)
BENMMI_4.3-7.tgz(r-4.4-any)BENMMI_4.3-7.tgz(r-4.3-any)
BENMMI_4.3-7.tar.gz(r-4.5-noble)BENMMI_4.3-7.tar.gz(r-4.4-noble)
BENMMI_4.3-7.tgz(r-4.4-emscripten)BENMMI_4.3-7.tgz(r-4.3-emscripten)
BENMMI.pdf |BENMMI.html✨
BENMMI/json (API)
NEWS
# Install 'BENMMI' in R: |
install.packages('BENMMI', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues
Last updated 3 days agofrom:d19a823d63 (on package/BENMMI). Checks:ERROR: 1 OK: 6. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | FAIL | Oct 27 2024 |
R-4.5-win | OK | Oct 27 2024 |
R-4.5-linux | OK | Oct 27 2024 |
R-4.4-win | OK | Oct 27 2024 |
R-4.4-mac | OK | Oct 27 2024 |
R-4.3-win | OK | Oct 27 2024 |
R-4.3-mac | OK | Oct 27 2024 |
Exports:benmmiBENMMIBENMMIdirci_meantoString_weights
Dependencies:benthosbitbit64clicliprcolorspacecommonmarkcpp11crayondplyrevaluatefansifarvergenericsggplot2gluegtablehighrhmsisobandjsonliteknitrlabelinglatticelazyevallifecyclemagrittrmarkdownMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerreadrrlangscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrxfunxtableyaml
BENMMI: An Introduction
Rendered fromBENMMI_User_Manual.Rnw
usingknitr::knitr
on Oct 27 2024.Last update: 2024-10-27
Started: 2024-10-27
BENMMI: FAQ
Rendered fromFAQ.Rnw
usingknitr::knitr
on Oct 27 2024.Last update: 2024-10-27
Started: 2024-10-27
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Perform BENMMI Analysis | BENMMI benmmi |
Benthic Multi-Metric Indicator Analysis | benmmi-pkg _PACKAGE |
Create BENMMI Directory Structure | BENMMIdir |
Mean and Confidence Interval | ci_mean |
Read and Validate BENMMI Input Files | read_mmi |
Read BENMMI Settings File | read_settings |
Construct a Text Representation of a Weight Vector | toString_weights |