Package: preseqR 4.0.0

Chao Deng

preseqR: Predicting Species Accumulation Curves

Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <arxiv:1607.02804v3>.

Authors:Chao Deng, Timothy Daley and Andrew D. Smith

preseqR_4.0.0.tar.gz
preseqR_4.0.0.zip(r-4.7)preseqR_4.0.0.zip(r-4.6)preseqR_4.0.0.zip(r-4.5)
preseqR_4.0.0.tgz(r-4.6-any)preseqR_4.0.0.tgz(r-4.5-any)
preseqR_4.0.0.tar.gz(r-4.7-any)preseqR_4.0.0.tar.gz(r-4.6-any)
preseqR_4.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
preseqR/json (API)

# Install 'preseqR' in R:
install.packages('preseqR', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues

Datasets:

On CRAN:

Conda:

archivedpackagesr-universe

5.04 score 5 stars 3 packages 122 scripts 422 downloads 4 mentions 20 exports 1 dependencies

Last updated from:4ff2a7ec64 (on package/preseqR). Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK108
source / vignettesOK135
linux-release-x86_64OK117
macos-release-arm64OK85
macos-oldrel-arm64OK89
windows-develOK86
windows-releaseOK71
windows-oldrelOK76
wasm-releaseOK94

Exports:bbc.rSACcs.rSACds.rSACds.rSAC.bootstrapfisher.alphafisher.rSACkmer.frac.curvekmer.frac.curve.bootstrappreseqR.interpolate.rSACpreseqR.nonreplace.samplingpreseqR.optimal.sequencingpreseqR.rSACpreseqR.rSAC.bootstrappreseqR.rSAC.sequencing.rmduppreseqR.sample.covpreseqR.sample.cov.bootstrappreseqR.simu.histpreseqR.ztnb.emztnb.rSACztp.rSAC

Dependencies:polynom