{ "_id": "6a2ba59057839859431928cf", "Package": "symphony", "Title": "Efficient and Precise Single-Cell Reference Atlas Mapping", "Version": "0.1.3", "Authors@R": "c(\nperson(given = \"Joyce\", family = \"Kang\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1962-1291\"),\nemail = \"joyce.b.kang@gmail.com\"),\nperson(\"Ilya\", \"Korsunsky\", email = \"ilya.korsunsky@gmail.com\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0003-4848-3948\")),\nperson(\"Soumya\", \"Raychaudhuri\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0002-1901-8265\"))\n)", "Description": "Implements the Symphony single-cell reference building and\nquery mapping algorithms and additional functions described in\nKang et al\n.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-11 10:30:16 UTC", "User": "root" }, "Author": "Joyce Kang [aut, cre] (ORCID:\n), Ilya Korsunsky 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Useful if you would like your code to be more modular. Note that you must have saved vargenes_means_sds and PCA loadings.", "topics": [ "buildReferenceFromHarmonyObj" ] }, { "page": "calcknncorr", "title": "Calculates the k-NN correlation, which measures how well the sorted ordering of k nearest reference neighbors in a gold standard embedding correlate with the ordering for the same reference cells in an alternative embedding (i.e. from reference mapping). 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