{ "_id": "6a2a98267b7a29ca60050112", "Package": "spef", "Title": "Semiparametric Estimating Functions", "Version": "1.0.9", "Authors@R": "c(person(\"Sy Han (Steven)\", \"Chiou\", email = \"schiou@utdallas.edu\", role = c(\"aut\", \"cre\")),\nperson(\"Xiaojing\", \"Wang\", role = \"aut\"),\nperson(\"Jun\", \"Yan\", role = \"aut\"))", "Description": "Functions for fitting semiparametric regression models for\npanel count survival data. An overview of the package can be\nfound in Wang and Yan (2011) \nand Chiou et al. (2018) .", "License": "GPL (>= 3)", "URL": "http://github.com/stc04003/spef", "BugReports": "http://github.com/stc04003/spef/issues", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "6.1.1", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-11 10:27:52 UTC", "User": "root" }, "Author": "Sy Han (Steven) Chiou [aut, cre], Xiaojing Wang [aut], Jun Yan\n[aut]", "Maintainer": "Sy Han (Steven) Chiou ", "Repository": "https://cranhaven.r-universe.dev", "Date/Publication": "2026-06-11 01:02:00 UTC", "RemoteUrl": "https://github.com/cranhaven/cranhaven.r-universe.dev", "RemoteRef": "package/spef", "RemoteSha": "3407ea96d8946425ed72012f460a7c0156aed187", "RemoteSubdir": "spef", "MD5sum": "62cfd8a17d5b2306fcb65c4f53c5fbd9", "_user": "cranhaven", "_type": "src", "_file": "spef_1.0.9.tar.gz", "_fileid": "e372dc735a82ba8d19c720d65917bfe174651933bb83d2f9fa16d694821e9ca9", "_filesize": 240231, "_sha256": "e372dc735a82ba8d19c720d65917bfe174651933bb83d2f9fa16d694821e9ca9", "_created": "2026-06-11T10:27:52.000Z", "_published": "2026-06-11T11:12:38.243Z", "_distro": "noble", "_jobs": [ { "job": 80775916930, "time": 136, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7561594216" }, { "job": 80775916844, "time": 148, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7561597818" }, { "job": 80775916827, "time": 136, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7561593967" }, { "job": 80775916826, "time": 171, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7561605885" }, { "job": 80775916971, "time": 124, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7562472966" }, { "job": 80775916866, "time": 367, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7561841540" }, { "job": 80775916880, "time": 145, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7562477707" }, { "job": 80775916828, "time": 274, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7561811399" }, { "job": 80775507428, "time": 141, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7561545178" }, { "job": 80775916825, "time": 103, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7561582904" }, { "job": 80775916803, "time": 128, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7561591200" }, { "job": 80775916793, "time": 110, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7561584380" }, { "job": 80775916813, "time": 126, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7561589594" } ], "_buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cranhaven/cranhaven.r-universe.dev", "_commit": { "id": "3407ea96d8946425ed72012f460a7c0156aed187", "author": "GitHub Action ", "committer": "GitHub Action ", "message": "Add spef to CRANhaven, because archived on 2026-06-11 01:02:00 +0000\n", "time": 1781139720 }, "_maintainer": { "name": "Sy Han (Steven) Chiou", "email": "schiou@utdallas.edu", "login": "stc04003", "description": "Assistant Professor", "uuid": 22360641 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4.0", "role": "Depends" }, { "package": "BB", "role": "Imports" }, { "package": "SQUAREM", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "sm", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "plyr", "role": "Imports" }, { "package": "nleqslv", "role": "Imports" } ], "_owner": "cranhaven", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-24", "n": 1 } ], "_tags": [], "_topics": [ "archived", "packages", "r-universe" ], "_stars": 5, "_contributors": [ { "user": "henrikbengtsson", "count": 183, "uuid": 1616850 } ], "_userbio": { "uuid": 161993010, "type": "organization", "name": "cranhaven", "description": "CRANhaven - Repository for Recently Archived CRAN Packages" }, "_downloads": { "count": 265, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/spef" }, "_devurl": "https://github.com/stc04003/spef", "_searchresults": 9, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/spef.html", "manual.pdf" ], "_homeurl": "https://github.com/stc04003/spef", "_realowner": "stc04003", "_cranurl": false, "_releases": [ { "version": "0.1-0", "date": "2010-05-22" }, { "version": "0.1-3", "date": "2010-06-10" }, { "version": "0.1-7", "date": "2010-09-20" }, { "version": "1.0-0", "date": "2016-09-07" }, { "version": "1.0-1", "date": "2016-09-22" }, { "version": "1.0-3", "date": "2017-04-25" }, { "version": "1.0-4", "date": "2017-07-18" }, { "version": "1.0-5", "date": "2017-08-14" }, { "version": "1.0-6", "date": "2018-02-04" }, { "version": "1.0-7", "date": "2018-02-26" }, { "version": "1.0.8", "date": "2018-08-01" }, { "version": "1.0.9", "date": "2020-05-24" } ], "_exports": [ "is.PanelSurv", "panelReg", "PanelSurv" ], "_datasets": [ { "name": "bladTumor", "title": "Bladder Tumors Cancer Recurrences", "object": "bladTumor", "class": [ "data.frame" ], "fields": [ "subject", "time", "count", "number", "size", "pyridoxine", "thiotepa", "count2" ], "rows": 292, "table": true, "tojson": true }, { "name": "blaTum", "title": "Bladder Tumors Cancer Recurrences", "object": "blaTum", "class": [ "data.frame" ], "fields": [ "id", "treatment", "size", "num", "time", "count" ], "rows": 920, "table": true, "tojson": true }, { "name": "skinTumor", "title": "Skin cancer chemoprevention trial", "object": "skinTumor", "class": [ "data.frame" ], "fields": [ "id", "time", "age", "male", "dfmo", "priorTumor", "countBC", "countSC", "count" ], "rows": 2523, "table": true, "tojson": true }, { "name": "skiTum", "title": "A Simulated Data Mimicking a Skin Cancer Chemoprevention Trial", "object": "skiTum", "class": [ "data.frame" ], "fields": [ "id", "time", "count", "age", "male", "dfmo", "priorTumor" ], "rows": 894, "table": true, "tojson": true } ], "_help": [ { "page": "spef-package", "title": "spef: Semiparametric Estimating Functions", "topics": [ "spef-package", "spef-packages", "_PACKAGE" ] }, { "page": "bladTumor", "title": "Bladder Tumors Cancer Recurrences", "topics": [ "bladTumor" ] }, { "page": "blaTum", "title": "Bladder Tumors Cancer Recurrences", "topics": [ "blaTum" ] }, { "page": "panelReg", "title": "Fits Semiparametric Regression Models for Panel Count Survival Data", "topics": [ "panelReg" ] }, { "page": "panelReg.object", "title": "Semiparametric Panel Count Regression Object", "topics": [ "panelReg.object" ] }, { "page": "PanelSurv", "title": "Create a PanelSurv Object", "topics": [ "is.PanelSurv", "PanelSurv" ] }, { "page": "plot.panelReg", "title": "Plot a 'panelReg' Object.", "topics": [ "plot.panelReg" ] }, { "page": "plot.PanelSurv", "title": "Produce Tile Plot", "topics": [ "plot.PanelSurv" ] }, { "page": "skinTumor", "title": "Skin cancer chemoprevention trial", "topics": [ "skinTumor" ] }, { "page": "skiTum", "title": "A Simulated Data Mimicking a Skin Cancer Chemoprevention Trial", "topics": [ "skiTum" ] } ], "_rundeps": [ "BB", "cli", "cpp11", "farver", "ggplot2", "glue", "gtable", "isoband", "labeling", "lattice", "lifecycle", "Matrix", "nleqslv", "plyr", "quadprog", "R6", "RColorBrewer", "Rcpp", "rlang", "S7", "scales", "sm", "SQUAREM", "survival", "vctrs", "viridisLite", "withr" ], "_score": 1.6989700043360187, "_indexed": false, "_nocasepkg": "spef", "_universes": [ "cranhaven" ], "_indexurl": "https://stc04003.r-universe.dev/spef", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.9", "date": "2026-06-11T10:30:01.000Z", "distro": "noble", "arch": "aarch64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "5ffac6a906fa4ce92309d9cf61431cfc1b573693392afee0d7dda625650aefa7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.7.0", "os": "linux", "version": "1.0.9", "date": "2026-06-11T10:30:02.000Z", "distro": "noble", "arch": "x86_64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "2308ba597b741e0e36f8afdddd647910581804388edae7b039d89f75141f5686", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.6.0", "os": "linux", "version": "1.0.9", "date": "2026-06-11T10:30:00.000Z", "distro": "noble", "arch": "aarch64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "590bdbffe3e91eb9304e5ed21a79641258de655d781294d61f82ca71ab0bc497", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.6.0", "os": "linux", "version": "1.0.9", "date": "2026-06-11T10:30:26.000Z", "distro": "noble", "arch": "x86_64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "b282526e49cc1e641670f507192ccc2a5346dafacad7291492534c5f3a3f2a44", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.5.3", "os": "mac", "version": "1.0.9", "date": "2026-06-11T11:11:25.000Z", "arch": "aarch64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "c9cdf1df9d2132dedb3d4e3633211da05b6f76105ed202bb818cf4de9fe29311", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.5.3", "os": "mac", "version": "1.0.9", "date": "2026-06-11T10:39:34.000Z", "arch": "x86_64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "adac3e973c3ed4974079b09ea40752dda0ffe32cbae72ab00bf057a2771eeea0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.6.0", "os": "mac", "version": "1.0.9", "date": "2026-06-11T11:11:30.000Z", "arch": "aarch64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "58e14ead30b4b8c814bbf6aacbdfc3d397931b0eae4516c624f78020b6a2b9bc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.6.0", "os": "mac", "version": "1.0.9", "date": "2026-06-11T10:39:19.000Z", "arch": "x86_64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "71e1e3fdaf2029f49587a458ebb0651f6d91660ce00db9fdc53869c417f62dc4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.9", "date": "2026-06-11T10:30:02.000Z", "arch": "emscripten", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "1d08189c3c66fda7a24891acaad7bbac28788263b1e3cc32802df247a83a29d1", "status": "success", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.7.0", "os": "win", "version": "1.0.9", "date": "2026-06-11T10:29:26.000Z", "arch": "x86_64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "eca21a3af8f91c35c0cbeaa327975d27b491960799cfa1635854eb87543625c4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.5.3", "os": "win", "version": "1.0.9", "date": "2026-06-11T10:29:11.000Z", "arch": "x86_64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "f1920fe3bd27d82279c9c65c366430617e75a15cbe6df089b36b1715ed66ca92", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" }, { "r": "4.6.0", "os": "win", "version": "1.0.9", "date": "2026-06-11T10:29:18.000Z", "arch": "x86_64", "commit": "3407ea96d8946425ed72012f460a7c0156aed187", "fileid": "d258b63c6d36999f08c2bafaafbda138f698fe057981d15e2cfcc6ac6276cb5c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340415150" } ] }