{
  "_id": "6a2a8f6d7b7a29ca6004b984",
  "Package": "bsam",
  "Type": "Package",
  "Title": "Bayesian State-Space Models for Animal Movement",
  "Version": "1.1.3",
  "Date": "2020-08-31",
  "Authors@R": "c(\nperson(\"Ian\", \"Jonsen\", email = \"ian.jonsen@mq.edu.au\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Sophie\", \"Bestley\", email = \"sophie.bestley@aad.gov.au\",\nrole = \"ctb\"),\nperson(\"Simon\", \"Wotherspoon\",  email = \"simon.wotherspoon@utas.edu.au\",\nrole = \"ctb\"),\nperson(\"Michael\", \"Sumner\", email = \"mdsumner@gmail.com\", role = \"ctb\"),\nperson(\"Joanna\", \"Mills Flemming\", email = \"joanna.flemming@dal.ca\",\nrole = \"ctb\")\n)",
  "SystemRequirements": "JAGS (>= 4.3.0)",
  "Description": "Tools to fit Bayesian state-space models to animal\ntracking data. Models are provided for location filtering,\nlocation filtering and behavioural state estimation, and their\nhierarchical versions. The models are primarily intended for\nfitting to ARGOS satellite tracking data but options exist to\nfit to other tracking data types. For Global Positioning System\ndata, consider the 'moveHMM' package. Simplified Markov Chain\nMonte Carlo convergence diagnostic plotting is provided but\nusers are encouraged to explore tools available in packages\nsuch as 'coda' and 'boa'.",
  "License": "GPL-2",
  "URL": "<https://github.com/ianjonsen/bsam>",
  "BugReports": "https://github.com/ianjonsen/bsam/issues",
  "LazyData": "yes",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.1",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-11 10:24:18 UTC",
    "User": "root"
  },
  "Author": "Ian Jonsen [aut, cre], Sophie Bestley [ctb], Simon Wotherspoon\n[ctb], Michael Sumner [ctb], Joanna Mills Flemming [ctb]",
  "Maintainer": "Ian Jonsen <ian.jonsen@mq.edu.au>",
  "Config/pak/sysreqs": "jags",
  "Repository": "https://cranhaven.r-universe.dev",
  "Date/Publication": "2026-06-11 01:02:00 UTC",
  "RemoteUrl": "https://github.com/cranhaven/cranhaven.r-universe.dev",
  "RemoteRef": "package/bsam",
  "RemoteSha": "b822cb9481322bef013d5ef13e87d4423048fe88",
  "RemoteSubdir": "bsam",
  "MD5sum": "d60784bf94feb995ca81dfb7f3a76d38",
  "_user": "cranhaven",
  "_type": "src",
  "_file": "bsam_1.1.3.tar.gz",
  "_fileid": "978ca67d2a8062e5320c23d7d5e51e8f49de765880497d8225d8b52ddafb587d",
  "_filesize": 162913,
  "_sha256": "978ca67d2a8062e5320c23d7d5e51e8f49de765880497d8225d8b52ddafb587d",
  "_created": "2026-06-11T10:24:18.000Z",
  "_published": "2026-06-11T10:35:25.403Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80775293075,
      "time": 146,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7561521400"
    },
    {
      "job": 80775293079,
      "time": 142,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7561520020"
    },
    {
      "job": 80775293068,
      "time": 108,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7561690868"
    },
    {
      "job": 80775293069,
      "time": 140,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7561683382"
    },
    {
      "job": 80774736914,
      "time": 183,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7561467334"
    },
    {
      "job": 80775293090,
      "time": 104,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7561510408"
    },
    {
      "job": 80775293111,
      "time": 121,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7561512411"
    },
    {
      "job": 80775293092,
      "time": 118,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7561511644"
    },
    {
      "job": 80775293077,
      "time": 120,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7561512389"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340188219",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cranhaven/cranhaven.r-universe.dev",
  "_commit": {
    "id": "b822cb9481322bef013d5ef13e87d4423048fe88",
    "author": "GitHub Action <action@github.com>",
    "committer": "GitHub Action <action@github.com>",
    "message": "Add bsam to CRANhaven, because archived on 2026-06-11 01:02:00 +0000\n",
    "time": 1781139720
  },
  "_maintainer": {
    "name": "Ian Jonsen",
    "email": "ian.jonsen@mq.edu.au"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6.0",
      "role": "Depends"
    },
    {
      "package": "rjags",
      "version": ">= 4-10",
      "role": "Depends"
    },
    {
      "package": "coda",
      "version": ">= 0.19-3",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "version": ">= 1.0.0",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "version": ">= 3.3.2",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "version": ">= 2.3",
      "role": "Imports"
    },
    {
      "package": "msm",
      "version": ">= 1.6.8",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "version": ">= 1.1-1",
      "role": "Imports"
    },
    {
      "package": "rworldxtra",
      "version": ">= 1.01",
      "role": "Imports"
    },
    {
      "package": "sp",
      "version": ">= 1.2-3",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "version": ">= 3.0.1",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "version": ">= 1.7.9",
      "role": "Imports"
    }
  ],
  "_owner": "cranhaven",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-24",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "archived",
    "packages",
    "r-universe",
    "jags",
    "cpp"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "henrikbengtsson",
      "count": 183,
      "uuid": 1616850
    }
  ],
  "_userbio": {
    "uuid": 161993010,
    "type": "organization",
    "name": "cranhaven",
    "description": "CRANhaven - Repository for Recently Archived CRAN Packages"
  },
  "_downloads": {
    "count": 695,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bsam"
  },
  "_mentions": 12,
  "_devurl": "https://github.com/ianjonsen/bsam",
  "_searchresults": 34,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/bsam.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ianjonsen/bsam",
  "_realowner": "ianjonsen",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2016-08-06"
    },
    {
      "version": "1.1.0",
      "date": "2016-11-01"
    },
    {
      "version": "1.1.1",
      "date": "2016-11-17"
    },
    {
      "version": "1.1.2",
      "date": "2017-07-01"
    },
    {
      "version": "1.1.3",
      "date": "2020-09-01"
    }
  ],
  "_exports": [
    "dat4jags",
    "diag_ssm",
    "diagSSM",
    "fit_ssm",
    "fitSSM",
    "get_summary",
    "hssm",
    "map_ssm",
    "plot_fit",
    "plotSSM",
    "simulate",
    "ssm",
    "tpar"
  ],
  "_datasets": [
    {
      "name": "ellie1",
      "title": "Elephant seal Argos satellite data (1 individual)",
      "object": "ellie1",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "id",
        "date",
        "lc",
        "lon",
        "lat"
      ],
      "rows": 405,
      "table": true,
      "tojson": true
    },
    {
      "name": "ellie2",
      "title": "Elephant seal Argos satellite data (2 individuals)",
      "object": "ellie2",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "id",
        "date",
        "lc",
        "lon",
        "lat"
      ],
      "rows": 709,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "bsam-package",
      "title": "Fit Bayesian state-space models to animal tracking data",
      "topics": [
        "bsam-package",
        "bsam"
      ]
    },
    {
      "page": "dat4jags",
      "title": "Correlated Random Walk Filter",
      "topics": [
        "dat4jags"
      ]
    },
    {
      "page": "diag_ssm",
      "title": "Plot standard McMC convergence diagnostics to help determine lack of model convergence.",
      "topics": [
        "diag_ssm"
      ]
    },
    {
      "page": "ellie1",
      "title": "Elephant seal Argos satellite data (1 individual)",
      "topics": [
        "ellie1"
      ]
    },
    {
      "page": "ellie2",
      "title": "Elephant seal Argos satellite data (2 individuals)",
      "topics": [
        "ellie2"
      ]
    },
    {
      "page": "fit_ssm",
      "title": "Fit Bayesian state-space models to animal movement data",
      "topics": [
        "fit_ssm"
      ]
    },
    {
      "page": "bsam-deprecated",
      "title": "Deprecated functions.",
      "topics": [
        "diagSSM",
        "fitSSM",
        "plotSSM"
      ]
    },
    {
      "page": "get_summary",
      "title": "Extract summary output and optionally export as a .csv file.",
      "topics": [
        "get_summary"
      ]
    },
    {
      "page": "hssm",
      "title": "Fits hierarchical state-space models to Argos data",
      "topics": [
        "hssm"
      ]
    },
    {
      "page": "map_ssm",
      "title": "Plot estimated track, behavioural states and observations on a map.",
      "topics": [
        "map_ssm"
      ]
    },
    {
      "page": "plot_fit",
      "title": "Plot the 1-D time-series of estimated location and behavioural states",
      "topics": [
        "plot_fit"
      ]
    },
    {
      "page": "simulate",
      "title": "Simulate from the DCRW model with Argos location errors",
      "topics": [
        "simulate"
      ]
    },
    {
      "page": "ssm",
      "title": "Fits state-space models to Argos data",
      "topics": [
        "ssm"
      ]
    },
    {
      "page": "tpar",
      "title": "ARGOS Error Fixed Parameters",
      "topics": [
        "tpar"
      ]
    }
  ],
  "_readme": "https://github.com/cranhaven/cranhaven.r-universe.dev/raw/package/bsam/bsam/README.md",
  "_rundeps": [
    "cli",
    "coda",
    "cpp11",
    "dplyr",
    "expm",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "lubridate",
    "magrittr",
    "Matrix",
    "msm",
    "mvtnorm",
    "pillar",
    "pkgconfig",
    "R6",
    "RColorBrewer",
    "rjags",
    "rlang",
    "rworldxtra",
    "S7",
    "scales",
    "sp",
    "survival",
    "tibble",
    "tidyselect",
    "timechange",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libjags",
      "package": "jags",
      "headers": "jags",
      "source": "jags",
      "version": "4.3.2-2.2404.0",
      "name": "jags",
      "homepage": "https://mcmc-jags.sourceforge.io",
      "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 3.929418925714293,
  "_indexed": false,
  "_nocasepkg": "bsam",
  "_universes": [
    "cranhaven"
  ],
  "_indexurl": "https://ianjonsen.r-universe.dev/bsam",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-06-11T10:26:25.000Z",
      "distro": "noble",
      "commit": "b822cb9481322bef013d5ef13e87d4423048fe88",
      "fileid": "2e8b863ba7c53be1044b6322e8a24480f31a98b53cf03e64e494dfcd3eca122a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340188219"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-06-11T10:26:22.000Z",
      "distro": "noble",
      "commit": "b822cb9481322bef013d5ef13e87d4423048fe88",
      "fileid": "5660e325ad55cc4d6f53f0767541b1905ac4d24f82666e892f8ba7150e4982e9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340188219"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.3",
      "date": "2026-06-11T10:34:38.000Z",
      "commit": "b822cb9481322bef013d5ef13e87d4423048fe88",
      "fileid": "d9c7a548312c0c11a86d6d591019b0e2c5d6d50326b3040b7343bc5dbc29823c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340188219"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.3",
      "date": "2026-06-11T10:34:02.000Z",
      "commit": "b822cb9481322bef013d5ef13e87d4423048fe88",
      "fileid": "70feff09d7056d0bc3c98bb696c28c10c3a713648cc52ba8aafc30ea50a959bf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340188219"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.3",
      "date": "2026-06-11T10:26:35.000Z",
      "commit": "b822cb9481322bef013d5ef13e87d4423048fe88",
      "fileid": "10fde9234c80fac259e982f91639721faed0b47960d65abde45ea93b7096b1d5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340188219"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-06-11T10:25:50.000Z",
      "commit": "b822cb9481322bef013d5ef13e87d4423048fe88",
      "fileid": "23c250f6323608a1f51bf1ca2b74cd5cc120a9e7eb6d929f9f72a905cf167f9a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340188219"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-06-11T10:25:36.000Z",
      "commit": "b822cb9481322bef013d5ef13e87d4423048fe88",
      "fileid": "87fdc91b7e20df8d25ad4c090ba450beab1cc11869d405dde40065f2a8566baf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340188219"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-06-11T10:25:49.000Z",
      "commit": "b822cb9481322bef013d5ef13e87d4423048fe88",
      "fileid": "c77a95d9248c1ff48f0f1a54e0fdfdae562f1a107e191f17274379a658aeb375",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/27340188219"
    }
  ]
}