{ "_id": "6a1018fdacfb0bcc41c85cc9", "Package": "EBPRS", "Type": "Package", "Title": "Derive Polygenic Risk Score Based on Emprical Bayes Theory", "Version": "2.1.0", "Author": "Shuang Song [aut, cre], Wei Jiang [aut], Lin Hou [aut] and\nHongyu Zhao [aut]", "Maintainer": "Shuang Song ", "Description": "EB-PRS is a novel method that leverages information for\neffect sizes across all the markers to improve the prediction\naccuracy. No parameter tuning is needed in the method, and no\nexternal information is needed. This R-package provides the\ncalculation of polygenic risk scores from the given training\nsummary statistics and testing data. We can use EB-PRS to\nextract main information, estimate Empirical Bayes parameters,\nderive polygenic risk scores for each individual in testing\ndata, and evaluate the PRS according to AUC and predictive r2.\nSee Song et al. 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Repository for Recently Archived CRAN Packages" }, "_downloads": { "count": 207, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/EBPRS" }, "_devurl": "https://github.com/cranhaven/cranhaven.r-universe.dev", "_searchresults": 10, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/EBPRS.html", "manual.pdf" ], "_realowner": "shuangsong0110", "_cranurl": false, "_releases": [ { "version": "1.0.1", "date": "2018-11-03" }, { "version": "1.1.2", "date": "2019-02-14" }, { "version": "1.1.5", "date": "2019-08-07" }, { "version": "1.2.0", "date": "2019-10-10" }, { "version": "1.2.1", "date": "2019-10-12" }, { "version": "1.2.2", "date": "2019-11-07" }, { "version": "2.0.1", "date": "2020-01-16" }, { "version": "2.0.3", "date": "2020-02-12" }, { "version": "2.0.4", "date": "2020-07-10" }, { "version": "2.1.0", "date": "2020-08-26" } ], "_exports": [ "EBPRS", "EBPRSpackage", "read_plink", "validate" ], "_datasets": [ { "name": "traindat", "title": "Example data for training set", "object": "traindat", "class": [ "data.table", "data.frame" ], "fields": [ "CHROM", "POS", "A1", "A2", "OR", "P", "SNP", "N" ], "rows": 100, "table": true, "tojson": true } ], "_help": [ { "page": "EBPRS", "title": "Main function", "topics": [ "EBPRS" ] }, { "page": "EBPRSpackage", "title": "Description of the package", "topics": [ "EBPRSpackage" ] }, { "page": "read_plink", "title": "Read plink bfiles to R and reformat", "topics": [ "read_plink" ] }, { "page": "traindat", "title": "Example data for training set", "topics": [ "traindat" ] }, { "page": "validate", "title": "Validate the performance of EBPRS", "topics": [ "validate" ] } ], "_rundeps": [ "BEDMatrix", "bitops", "caTools", "crochet", "data.table", "gplots", "gtools", "KernSmooth", "ROCR" ], "_score": 1.6989700043360187, "_indexed": false, "_nocasepkg": "ebprs", "_universes": [ "cranhaven" ], "_indexurl": "https://shuangsong0110.r-universe.dev/EBPRS", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.1.0", "date": "2026-05-14T19:39:05.000Z", "distro": "noble", "commit": "443f8d554e15c5764f34784463efb9d776d059af", "fileid": "2799b598ada54cd73298f3a9fd37ad1c3351f94974825a4a97f3c39b30e3a5dc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/25881201081" }, { "r": "4.6.0", "os": "linux", "version": "2.1.0", "date": "2026-05-14T19:39:08.000Z", "distro": "noble", "commit": "443f8d554e15c5764f34784463efb9d776d059af", "fileid": "4dc3d6ad74cb94f13784eb1d7f697aadcdcfa69644835d38fb4ec61d25f4d724", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/25881201081" }, { "r": "4.5.3", "os": "mac", "version": "2.1.0", "date": "2026-05-14T19:39:06.000Z", "commit": "443f8d554e15c5764f34784463efb9d776d059af", "fileid": "133c75f0b9b55d2d862da73e5cf7bb774d3f472a4229fc40dba256c423b04197", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/25881201081" }, { "r": "4.6.0", "os": "mac", "version": "2.1.0", "date": "2026-05-14T19:38:46.000Z", "commit": "443f8d554e15c5764f34784463efb9d776d059af", "fileid": "395b33b72d87c188297baec4e7152d0e9445a35a2000ce04bf0ee5c986e3e301", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/25881201081" }, { "r": "4.7.0", "os": "win", "version": "2.1.0", "date": "2026-05-14T19:38:26.000Z", "commit": "443f8d554e15c5764f34784463efb9d776d059af", "fileid": "9f92be10fcce60882237a4a361ba9c40bc39ee7c306713af2ec4f8b875f67255", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/25881201081" }, { "r": "4.5.3", "os": "win", "version": "2.1.0", "date": "2026-05-14T19:38:20.000Z", "commit": "443f8d554e15c5764f34784463efb9d776d059af", "fileid": "b8d0bc33954729ca6f716605d65a7c0b46ef580d9a75c088004da444b2c0587b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/25881201081" }, { "r": "4.6.0", "os": "win", "version": "2.1.0", "date": "2026-05-14T19:38:30.000Z", "commit": "443f8d554e15c5764f34784463efb9d776d059af", "fileid": "87fa245b8e379c2ee0bd6b9d1a6ad0cfad24f8c67e69609ce5d80b04e40db8c3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/25881201081" }, { "r": "4.6.0", "os": "wasm", "version": "2.1.0", "date": "2026-05-22T08:50:56.000Z", "commit": "443f8d554e15c5764f34784463efb9d776d059af", "fileid": "fac2909e5139b0ce51579f5e3ae0f18cde140b55a86cba0ef88f00b5027182ba", "status": "success", "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/25881201081" } ] }