{
  "_id": "6aeae66f9ceaa78f2009e66e",
  "Package": "CancerGram",
  "Type": "Package",
  "Title": "Prediction of Anticancer Peptides",
  "Version": "1.0.0",
  "LazyData": "TRUE",
  "Date": "2020-11-16",
  "Authors@R": "c(person(\"Michal\", \"Burdukiewicz\", \nemail = \"michalburdukiewicz@gmail.com\",\ncomment = c(ORCID = \"0000-0001-8926-582X\"),\nrole = c(\"cre\", \"aut\")),\nperson(\"Katarzyna\", \"Sidorczuk\",\nemail = \"sidorczuk.katarzyna17@gmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-6576-9054\")),\nperson(\"Filip\", \"Pietluch\",\nemail = \"fpietluch@gmail.com\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0001-6218-9804\")),\nperson(\"Dominik\", \"Rafacz\",\nemail = \"dominikrafacz@gmail.com\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0003-0925-1909\")),\nperson(\"Mateusz\", \"Bakala\",\nemail = \"matibakala@gmail.com\",\ncomment = c(ORCID = \"0000-0002-3213-2484\"),\nrole = c(\"ctb\")),\nperson(\"Jadwiga\", \"Słowik\",\ncomment = c(ORCID = \"0000-0003-3466-8933\"),\nemail = \"jadwiga.slowik5@gmail.com\",\nrole = c(\"ctb\")))",
  "Description": "Predicts anticancer peptides using random forests trained\non the n-gram encoded peptides. The implemented algorithm can\nbe accessed from both the command line and shiny-based GUI. The\nCancerGram model is too large for CRAN and it has to be\ndownloaded separately from the repository:\n<https://github.com/BioGenies/CancerGramModel>. For more\ninformation see: Burdukiewicz et al. (2020)\n<doi:10.3390/pharmaceutics12111045>.",
  "License": "GPL-3",
  "URL": "https://github.com/BioGenies/CancerGram",
  "BugReports": "https://github.com/BioGenies/CancerGram/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.1",
  "Language": "en-US",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-03 19:05:06 UTC",
    "User": "root"
  },
  "Author": "Michal Burdukiewicz [cre, aut]\n(<https://orcid.org/0000-0001-8926-582X>), Katarzyna Sidorczuk\n[aut] (<https://orcid.org/0000-0001-6576-9054>), Filip Pietluch\n[ctb] (<https://orcid.org/0000-0001-6218-9804>), Dominik Rafacz\n[ctb] (<https://orcid.org/0000-0003-0925-1909>), Mateusz Bakala\n[ctb] (<https://orcid.org/0000-0002-3213-2484>), Jadwiga Słowik\n[ctb] (<https://orcid.org/0000-0003-3466-8933>)",
  "Maintainer": "Michal Burdukiewicz <michalburdukiewicz@gmail.com>",
  "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev git libgmp3-dev make libharfbuzz-dev libgit2-dev\nlibicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev\nlibwebp-dev libxml2-dev libssl-dev libx11-dev zlib1g-dev",
  "Repository": "https://cranhaven.r-universe.dev",
  "Date/Publication": "2026-11-03 06:02:00 UTC",
  "RemoteUrl": "https://github.com/cranhaven/cranhaven.r-universe.dev",
  "RemoteRef": "package/CancerGram",
  "RemoteSha": "e221de59623694ae0a062235b7bbc628ac5cd2c0",
  "RemoteSubdir": "CancerGram",
  "_user": "cranhaven",
  "_type": "src",
  "_file": "CancerGram_1.0.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/9d062104991fe1b6dec2cb4720b6cb7cc8d43b9f625464aa0df496bd0eaef65d",
  "_filesize": 294443,
  "_sha256": "9d062104991fe1b6dec2cb4720b6cb7cc8d43b9f625464aa0df496bd0eaef65d",
  "_expires": "2027-02-11T19:09:22.000Z",
  "_created": "2026-11-03T19:05:06.000Z",
  "_published": "2026-11-04T08:01:51.785Z",
  "_upstream": "https://github.com/cranhaven/cranhaven.r-universe.dev",
  "_status": "success",
  "_maintainer": {
    "name": "Michal Burdukiewicz",
    "email": "michalburdukiewicz@gmail.com",
    "login": "michbur",
    "bluesky": "@burdukiewicz.bsky.social",
    "orcid": "0000-0001-8926-582X",
    "twitter": "@burdukiewicz",
    "description": "",
    "uuid": 5267317
  },
  "_jobs": [
    {
      "job": 126455881399,
      "time": 206,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13261209735"
    },
    {
      "job": 126455881907,
      "time": 196,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13261529528"
    },
    {
      "job": 126455878789,
      "time": 136,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13305975926"
    },
    {
      "job": 126455878758,
      "time": 122,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13305486742"
    },
    {
      "job": 126455879836,
      "time": 293,
      "config": "source",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13262677285"
    },
    {
      "job": 126455880624,
      "time": 148,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13263047281"
    },
    {
      "job": 126455880192,
      "time": 136,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13262389185"
    },
    {
      "job": 126455880746,
      "time": 119,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13262184179"
    },
    {
      "job": 126455881654,
      "time": 122,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13260984491"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41699089522",
  "_commit": {
    "id": "e221de59623694ae0a062235b7bbc628ac5cd2c0",
    "author": "GitHub Action <action@github.com>",
    "committer": "GitHub Action <action@github.com>",
    "message": "Add CancerGram to CRANhaven, because archived on 2026-11-03 06:02:00 +0000\n",
    "time": 1793685720
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "biogram",
      "role": "Imports"
    },
    {
      "package": "devtools",
      "role": "Imports"
    },
    {
      "package": "pbapply",
      "role": "Imports"
    },
    {
      "package": "ranger",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "stringi",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "pander",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "shinythemes",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    }
  ],
  "_owner": "cranhaven",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-45",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "archived",
    "packages",
    "r-universe"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "henrikbengtsson",
      "count": 183,
      "uuid": 1616850
    }
  ],
  "_userbio": {
    "uuid": 161993010,
    "type": "organization",
    "name": "cranhaven",
    "followers": 3,
    "description": "CRANhaven - Repository for Recently Archived CRAN Packages"
  },
  "_downloads": {
    "count": 239,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CancerGram"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/biogenies/cancergram",
  "_searchresults": 3,
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/CancerGram.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/biogenies/cancergram",
  "_realowner": "biogenies",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2020-11-19"
    }
  ],
  "_exports": [
    "CancerGram_gui",
    "install_CancerGramModel",
    "pred2df",
    "read_txt"
  ],
  "_datasets": [
    {
      "name": "CancerGram_predictions",
      "title": "Prediction of anticancer peptides",
      "object": "CancerGram_predictions",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "CancerGram-package",
      "title": "Prediction of anticancer peptides",
      "topics": [
        "CancerGram-package",
        "CancerGram"
      ]
    },
    {
      "page": "CancerGram_gui",
      "title": "CancerGram Graphical User Interface",
      "topics": [
        "CancerGram_gui"
      ]
    },
    {
      "page": "CancerGram_predictions",
      "title": "Prediction of anticancer peptides",
      "topics": [
        "CancerGram_predictions"
      ]
    },
    {
      "page": "install_CancerGramModel",
      "title": "Install CancerGramModel package containing model for ACP prediction",
      "topics": [
        "install_CancerGramModel"
      ]
    },
    {
      "page": "pred2df",
      "title": "Convert predictions to data.frame Return predictions as data.frame",
      "topics": [
        "pred2df"
      ]
    },
    {
      "page": "predict.cancergram_model",
      "title": "Predict anticancer peptides",
      "topics": [
        "predict.cancergram_model"
      ]
    },
    {
      "page": "read_txt",
      "title": "Read sequences from .txt file",
      "topics": [
        "read_txt"
      ]
    }
  ],
  "_readme": "https://github.com/cranhaven/cranhaven.r-universe.dev/raw/package/CancerGram/CancerGram/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "biogram",
    "brew",
    "brio",
    "bslib",
    "cachem",
    "callr",
    "cli",
    "clipr",
    "combinat",
    "commonmark",
    "cpp11",
    "crayon",
    "credentials",
    "curl",
    "desc",
    "devtools",
    "diffobj",
    "digest",
    "downlit",
    "dplyr",
    "ellipsis",
    "entropy",
    "evaluate",
    "fansi",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "gert",
    "gitcreds",
    "glue",
    "gmp",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr2",
    "ini",
    "jquerylib",
    "jsonlite",
    "knitr",
    "later",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "memoise",
    "mime",
    "miniUI",
    "openssl",
    "otel",
    "pak",
    "partitions",
    "pbapply",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "pkgdown",
    "pkgload",
    "polynom",
    "praise",
    "prettyunits",
    "processx",
    "profvis",
    "promises",
    "ps",
    "purrr",
    "R6",
    "ragg",
    "ranger",
    "rappdirs",
    "rbibutils",
    "rcmdcheck",
    "Rcpp",
    "RcppEigen",
    "Rdpack",
    "rdtools",
    "rlang",
    "rmarkdown",
    "roxygen2",
    "rprojroot",
    "rstudioapi",
    "rversions",
    "sass",
    "sessioninfo",
    "sets",
    "shiny",
    "slam",
    "sourcetools",
    "stringi",
    "sys",
    "systemfonts",
    "testthat",
    "textshaping",
    "tibble",
    "tidyselect",
    "tinytex",
    "urlchecker",
    "usethis",
    "utf8",
    "vctrs",
    "waldo",
    "whisker",
    "withr",
    "xfun",
    "xml2",
    "xopen",
    "xtable",
    "yaml",
    "zip"
  ],
  "_score": 2.6989700043360187,
  "_indexed": false,
  "_nocasepkg": "cancergram",
  "_universes": [
    "cranhaven"
  ],
  "_indexurl": "https://biogenies.r-universe.dev/CancerGram",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-11-03T19:08:19.000Z",
      "distro": "resolute",
      "commit": "e221de59623694ae0a062235b7bbc628ac5cd2c0",
      "fileid": "https://r2.ropensci.org/ee7905b8cd09571bc26d46a9bd4740426f7cb9abe9c327e42b86cd00dd4e8ae0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41699089522"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-11-03T19:08:09.000Z",
      "distro": "resolute",
      "commit": "e221de59623694ae0a062235b7bbc628ac5cd2c0",
      "fileid": "https://r2.ropensci.org/57d1fb6421f4f944b16f65e4ec50423a49922e91261f970b8668cbedb58cd3a9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41699089522"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-11-04T08:00:52.000Z",
      "commit": "e221de59623694ae0a062235b7bbc628ac5cd2c0",
      "fileid": "https://r2.ropensci.org/7c00d937b049addbcfab365a4292edc2fdc54166b761556ae8fe175635e486e0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41699089522"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-11-04T07:59:07.000Z",
      "commit": "e221de59623694ae0a062235b7bbc628ac5cd2c0",
      "fileid": "https://r2.ropensci.org/e7af2f1019336e068a0d8ba6720b3381c900475172d26052fd63c344d701615b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41699089522"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-11-03T19:08:00.000Z",
      "commit": "e221de59623694ae0a062235b7bbc628ac5cd2c0",
      "fileid": "https://r2.ropensci.org/5406e9a86218bc63d70b800afa238a9369fe34eb1fe5156df63331ef6430584c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41699089522"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-11-03T19:06:47.000Z",
      "commit": "e221de59623694ae0a062235b7bbc628ac5cd2c0",
      "fileid": "https://r2.ropensci.org/5863e562f32bdf7a480f9a84c3da0c4e1ff06e3a15f3375f03ae4ce2e20fdeb8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41699089522"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-11-03T19:06:41.000Z",
      "commit": "e221de59623694ae0a062235b7bbc628ac5cd2c0",
      "fileid": "https://r2.ropensci.org/db54bf9dcaeb5539023d45e5ba2ce669ede45f5f96aef62658055137cbab97dd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41699089522"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-11-03T19:06:42.000Z",
      "commit": "e221de59623694ae0a062235b7bbc628ac5cd2c0",
      "fileid": "https://r2.ropensci.org/a9a5ca5f338badcefc280bddd21a4b1b193a8d9646749785fcfa7c2ae4d57100",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41699089522"
    }
  ]
}