{
  "_id": "6aeae41e2e87f76f20ad1b16",
  "Package": "AmyloGram",
  "Type": "Package",
  "Title": "Prediction of Amyloid Proteins",
  "Version": "1.1",
  "LazyData": "TRUE",
  "Date": "2017-10-11",
  "Authors@R": "c(person(\"Michal\", \"Burdukiewicz\", email = \"michalburdukiewicz@gmail.com\", role = c(\"cre\", \"aut\")),\nperson(\"Piotr\", \"Sobczyk\", email = \"sobbombo@gmail.com\", role = \"ctb\"),\nperson(\"Stefan\", \"Roediger\", email = \"stefan.roedigier@b-tu.de\", role = \"ctb\"))",
  "Description": "Predicts amyloid proteins using random forests trained on\nthe n-gram encoded peptides. The implemented algorithm can be\naccessed from both the command line and shiny-based GUI.",
  "License": "GPL-3",
  "URL": "https://github.com/michbur/AmyloGram",
  "BugReports": "https://github.com/michbur/AmyloGram/issues",
  "RoxygenNote": "6.0.1",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-03 19:01:30 UTC",
    "User": "root"
  },
  "Author": "Michal Burdukiewicz [cre, aut], Piotr Sobczyk [ctb], Stefan\nRoediger [ctb]",
  "Maintainer": "Michal Burdukiewicz <michalburdukiewicz@gmail.com>",
  "Config/pak/sysreqs": "cmake libgmp3-dev make libuv1-dev zlib1g-dev",
  "Repository": "https://cranhaven.r-universe.dev",
  "Date/Publication": "2026-11-03 06:02:00 UTC",
  "RemoteUrl": "https://github.com/cranhaven/cranhaven.r-universe.dev",
  "RemoteRef": "package/AmyloGram",
  "RemoteSha": "86bc6d103b203591e1a5ce9cfa43aed2d5000b0d",
  "RemoteSubdir": "AmyloGram",
  "_user": "cranhaven",
  "_type": "src",
  "_file": "AmyloGram_1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/cfe120969fafd709a4ae4fcf299ad7fd817b21192b1c4e9afd402eade4dd1e67",
  "_filesize": 453869,
  "_sha256": "cfe120969fafd709a4ae4fcf299ad7fd817b21192b1c4e9afd402eade4dd1e67",
  "_expires": "2027-02-11T19:05:21.000Z",
  "_created": "2026-11-03T19:01:30.000Z",
  "_published": "2026-11-04T07:51:58.066Z",
  "_upstream": "https://github.com/cranhaven/cranhaven.r-universe.dev",
  "_status": "success",
  "_maintainer": {
    "name": "Michal Burdukiewicz",
    "email": "michalburdukiewicz@gmail.com",
    "login": "michbur",
    "bluesky": "@burdukiewicz.bsky.social",
    "twitter": "@burdukiewicz",
    "description": "",
    "uuid": 5267317
  },
  "_jobs": [
    {
      "job": 126455871399,
      "time": 182,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13262992080"
    },
    {
      "job": 126455871171,
      "time": 142,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13263430309"
    },
    {
      "job": 126455868332,
      "time": 140,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13305610516"
    },
    {
      "job": 126455868291,
      "time": 121,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13305012144"
    },
    {
      "job": 126455870022,
      "time": 205,
      "config": "source",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13262038503"
    },
    {
      "job": 126455870882,
      "time": 104,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13263405324"
    },
    {
      "job": 126455870890,
      "time": 95,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13262826851"
    },
    {
      "job": 126455871021,
      "time": 129,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13262003840"
    },
    {
      "job": 126455870524,
      "time": 108,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13263480200"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41698799785",
  "_commit": {
    "id": "86bc6d103b203591e1a5ce9cfa43aed2d5000b0d",
    "author": "GitHub Action <action@github.com>",
    "committer": "GitHub Action <action@github.com>",
    "message": "Add AmyloGram to CRANhaven, because archived on 2026-11-03 06:02:00 +0000\n",
    "time": 1793685720
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0.0",
      "role": "Depends"
    },
    {
      "package": "biogram",
      "role": "Imports"
    },
    {
      "package": "ranger",
      "role": "Imports"
    },
    {
      "package": "seqinr",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    }
  ],
  "_owner": "cranhaven",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-45",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "archived",
    "packages",
    "r-universe"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "henrikbengtsson",
      "count": 183,
      "uuid": 1616850
    }
  ],
  "_userbio": {
    "uuid": 161993010,
    "type": "organization",
    "name": "cranhaven",
    "followers": 3,
    "description": "CRANhaven - Repository for Recently Archived CRAN Packages"
  },
  "_downloads": {
    "count": 332,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/AmyloGram"
  },
  "_mentions": 8,
  "_devurl": "https://github.com/michbur/amylogram",
  "_searchresults": 20,
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/AmyloGram.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/michbur/amylogram",
  "_realowner": "michbur",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2016-09-24"
    },
    {
      "version": "1.1",
      "date": "2017-10-11"
    }
  ],
  "_exports": [
    "AmyloGram_gui",
    "is_protein",
    "read_txt"
  ],
  "_datasets": [
    {
      "name": "AmyloGram_model",
      "title": "Random forest model of amyloid proteins",
      "object": "AmyloGram_model",
      "class": [
        "ag_model"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "pep424",
      "title": "pep424 data set",
      "object": "pep424",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "spec_sens",
      "title": "Specificity/sensitivity balance",
      "object": "spec_sens",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Cutoff",
        "Sensitivity",
        "Specificity",
        "MCC"
      ],
      "rows": 99,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "AmyloGram-package",
      "title": "Prediction of amyloids",
      "topics": [
        "AmyloGram-package",
        "AmyloGram"
      ]
    },
    {
      "page": "AmyloGram_gui",
      "title": "AmyloGram Graphical User Interface",
      "topics": [
        "AmyloGram_gui"
      ]
    },
    {
      "page": "AmyloGram_model",
      "title": "Random forest model of amyloid proteins",
      "topics": [
        "AmyloGram_model"
      ]
    },
    {
      "page": "is_protein",
      "title": "Protein test",
      "topics": [
        "is_protein"
      ]
    },
    {
      "page": "pep424",
      "title": "pep424 data set",
      "topics": [
        "pep424"
      ]
    },
    {
      "page": "predict.ag_model",
      "title": "Predict amyloids",
      "topics": [
        "predict.ag_model"
      ]
    },
    {
      "page": "print.ag_model",
      "title": "Print AmyloGram object",
      "topics": [
        "print.ag_model"
      ]
    },
    {
      "page": "read_txt",
      "title": "Read sequences from .txt file",
      "topics": [
        "read_txt"
      ]
    },
    {
      "page": "spec_sens",
      "title": "Specificity/sensitivity balance",
      "topics": [
        "spec_sens"
      ]
    }
  ],
  "_readme": "https://github.com/cranhaven/cranhaven.r-universe.dev/raw/package/AmyloGram/AmyloGram/README.md",
  "_rundeps": [
    "ade4",
    "base64enc",
    "biogram",
    "bslib",
    "cachem",
    "cli",
    "combinat",
    "commonmark",
    "digest",
    "entropy",
    "fastmap",
    "fontawesome",
    "fs",
    "glue",
    "gmp",
    "htmltools",
    "httpuv",
    "jquerylib",
    "jsonlite",
    "later",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "mime",
    "nlme",
    "otel",
    "partitions",
    "pixmap",
    "polynom",
    "promises",
    "R6",
    "ranger",
    "rappdirs",
    "rbibutils",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "rlang",
    "sass",
    "segmented",
    "seqinr",
    "sets",
    "shiny",
    "slam",
    "sourcetools",
    "sp",
    "withr",
    "xtable"
  ],
  "_score": 3.6020599913279625,
  "_indexed": false,
  "_nocasepkg": "amylogram",
  "_universes": [
    "cranhaven"
  ],
  "_indexurl": "https://michbur.r-universe.dev/AmyloGram",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1",
      "date": "2026-11-03T19:04:30.000Z",
      "distro": "resolute",
      "commit": "86bc6d103b203591e1a5ce9cfa43aed2d5000b0d",
      "fileid": "https://r2.ropensci.org/525d2d8a7f99d75f925b03272ba3e6461d2683b496867e0cd463f76f50745c9b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41698799785"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "1.1",
      "date": "2026-11-03T19:03:47.000Z",
      "distro": "resolute",
      "commit": "86bc6d103b203591e1a5ce9cfa43aed2d5000b0d",
      "fileid": "https://r2.ropensci.org/9e4d4431d90e652ce527fd09a99df58909f741a1b2a27d76545ce7a43d06ec8b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41698799785"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1",
      "date": "2026-11-04T07:51:06.000Z",
      "commit": "86bc6d103b203591e1a5ce9cfa43aed2d5000b0d",
      "fileid": "https://r2.ropensci.org/609187ad85d3c93e33b992da3620a9057bcbf137f72abde611f02a011ebbe5db",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41698799785"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "1.1",
      "date": "2026-11-04T07:50:13.000Z",
      "commit": "86bc6d103b203591e1a5ce9cfa43aed2d5000b0d",
      "fileid": "https://r2.ropensci.org/314478127ac05dbc6b9ed8b3a3873c8f4d2ac38f7d4d781f8e27621e4c2e3d03",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41698799785"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1",
      "date": "2026-11-03T19:03:45.000Z",
      "commit": "86bc6d103b203591e1a5ce9cfa43aed2d5000b0d",
      "fileid": "https://r2.ropensci.org/535228565a26ef5f039c2f9bd42166f4c9a97eb657747a60a0c6db66dd0f8c93",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41698799785"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1",
      "date": "2026-11-03T19:02:56.000Z",
      "commit": "86bc6d103b203591e1a5ce9cfa43aed2d5000b0d",
      "fileid": "https://r2.ropensci.org/f0672aec7f96290a3d94024d1d8a56b1e85bf030a8dd0786ab60819e8aaa0d1d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41698799785"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1",
      "date": "2026-11-03T19:03:30.000Z",
      "commit": "86bc6d103b203591e1a5ce9cfa43aed2d5000b0d",
      "fileid": "https://r2.ropensci.org/a0352d8facc4171e23638bc4f3fdcecf135b4b1e2ee82b83e8cfe8b71a288be5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41698799785"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "1.1",
      "date": "2026-11-03T19:03:16.000Z",
      "commit": "86bc6d103b203591e1a5ce9cfa43aed2d5000b0d",
      "fileid": "https://r2.ropensci.org/0019b9979ea35309ec205a0351b4e36c86ddcaaef8f73c6392138c6577684561",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cranhaven/actions/runs/41698799785"
    }
  ]
}