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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SlaPMEG" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'SlaPMEG: Pathway Testing for Longitudinal Omics'
version: 1.0.2
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SlaPMEG
abstract: A self-contained hypothesis is tested for a given pathway of longitudinal
  omics. 'SlaPMEG' is a two-step procedure. First, a shared latent process mixed model
  is fitted over the longitudinal measures of omics in a pathway. This shared model
  allows deviation from the shared process at subject level (a random intercept, slope,
  or both per subject) and also at omic level (a random effect per omic). These random
  effects summarize the longitudinal trend of the observations which can be used to
  test for group differences using 'Globaltest' in the second step. If the pathway
  is large or the shared effect is small, the package fits a series of pairwise models
  and estimates the shared random effects based on them.
authors:
- family-names: Ebrahimpoor
  given-names: Mitra
  email: mitra.ebrahimpoor@gmail.com
  orcid: https://orcid.org/0000-0002-2299-876X
preferred-citation:
  type: manual
  title: Pathway testing for longitudinal metabolomics
  authors:
  - family-names: Ebrahimpoor
    given-names: Mitra
    email: mitra.ebrahimpoor@gmail.com
    orcid: https://orcid.org/0000-0002-2299-876X
  - family-names: Spitali
    given-names: Pietro
  - family-names: Goeman
    given-names: Jelle
  - family-names: Tsonaka
    given-names: Roula
  journal: Statistics in Medicine
  year: '2021'
  url: https://onlinelibrary.wiley.com/doi/full/10.1002/sim.8957
repository: https://cranhaven.r-universe.dev
commit: 5070e21f012c9a10a950531bbcb9f6efc6aed143
date-released: '2024-10-23'
contact:
- family-names: Ebrahimpoor
  given-names: Mitra
  email: mitra.ebrahimpoor@gmail.com
  orcid: https://orcid.org/0000-0002-2299-876X