# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SeqFeatR" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'SeqFeatR: A Tool to Associate FASTA Sequences and Features'
version: 0.3.3
doi: 10.1371/journal.pone.0146409
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SeqFeatR
abstract: Provides user friendly methods for the identification of sequence patterns
  that are statistically significantly associated with a property of the sequence.
  For instance, SeqFeatR allows to identify viral immune escape mutations for hosts
  of given HLA types. The underlying statistical method is Fisher's exact test, with
  appropriate corrections for multiple testing, or Bayes. Patterns may be point mutations
  or n-tuple of mutations. SeqFeatR offers several ways to visualize the results of
  the statistical analyses, see Budeus (2016) <https://doi.org/10.1371/journal.pone.0146409>.
authors:
- family-names: Budeus
  given-names: Bettina
  email: bettina.budeus@stud.uni-due.de
preferred-citation:
  type: article
  title: SeqFeatR for the Discovery of Feature-Sequence Associations
  authors:
  - family-names: Budeus
    given-names: Bettina
    email: bettina.budeus@stud.uni-due.de
  - family-names: Timm
    given-names: J'org
  - family-names: Hoffmann
    given-names: Daniel
  journal: PLoS ONE
  year: '2016'
  volume: '11'
  issue: '1'
  url: http://dx.doi.org/10.1371/journal.pone.0146409
  start: e0146409
  doi: 10.1371/journal.pone.0146409
repository: https://cranhaven.r-universe.dev
commit: a28466ebb1c32416bf3feb842e2975cd0c4cdb6b
date-released: '2026-02-13'
contact:
- family-names: Budeus
  given-names: Bettina
  email: bettina.budeus@stud.uni-due.de