# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "SNPfiltR" in publications use:'
type: software
license: MIT
title: 'SNPfiltR: Interactively Filter SNP Datasets'
version: 1.0.1
doi: 10.32614/CRAN.package.SNPfiltR
abstract: Is designed to interactively and reproducibly visualize and filter SNP (single-nucleotide
  polymorphism) datasets. This R-based implementation of SNP and genotype filters
  facilitates an interactive and iterative SNP filtering pipeline, which can be documented
  reproducibly via Rmarkdown. 'SNPfiltR' contains functions for visualizing various
  quality and missing data metrics for a SNP dataset, and then filtering the dataset
  based on user specified cutoffs. All functions take 'vcfR' objects as input, which
  can easily be generated by reading standard vcf (variant call format) files into
  R using the R package 'vcfR' (Knaus and Grünwald) (<https://doi.org/10.1111/1755-0998.12549>).
  Each 'SNPfiltR' function can return a newly filtered vcfR object, which can then
  be written to a local directory in standard vcf format using the 'vcfR' package,
  for downstream population genetic and phylogenetic analyses.
authors:
- family-names: DeRaad
  given-names: Devon
  email: devonderaad@gmail.com
  orcid: https://orcid.org/0000-0003-3105-985X
repository: https://cranhaven.r-universe.dev
commit: e067bd4fd982693cac3e2c39b030cdb32f13a177
date-released: '2023-03-17'
contact:
- family-names: DeRaad
  given-names: Devon
  email: devonderaad@gmail.com
  orcid: https://orcid.org/0000-0003-3105-985X