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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PLNmodels" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'PLNmodels: Poisson Lognormal Models'
version: 1.2.1
doi: 10.3389/fevo.2021.588292
identifiers:
- type: doi
  value: 10.32614/CRAN.package.PLNmodels
abstract: The Poisson-lognormal model and variants (Chiquet, Mariadassou and Robin,
  2021 <https://doi.org/10.3389/fevo.2021.588292>) can be used for a variety of multivariate
  problems when count data are at play, including principal component analysis for
  count data, discriminant analysis, model-based clustering and network inference.
  Implements variational algorithms to fit such models accompanied with a set of functions
  for visualization and diagnostic.
authors:
- family-names: Chiquet
  given-names: Julien
  email: julien.chiquet@inrae.fr
  orcid: https://orcid.org/0000-0002-3629-3429
- family-names: Mariadassou
  given-names: Mahendra
  email: mahendra.mariadassou@inrae.fr
  orcid: https://orcid.org/0000-0003-2986-354X
- family-names: Robin
  given-names: Stéphane
  email: stephane.robin@inrae.fr
- family-names: Gindraud
  given-names: François
  email: francois.gindraud@gmail.com
preferred-citation:
  type: article
  title: The Poisson-lognormal model as a versatile framework for the joint analysis
    of species abundances
  authors:
  - family-names: Chiquet
    given-names: Julien
    email: julien.chiquet@inrae.fr
    orcid: https://orcid.org/0000-0002-3629-3429
  - family-names: Mariadassou
    given-names: Mahendra
    email: mahendra.mariadassou@inrae.fr
    orcid: https://orcid.org/0000-0003-2986-354X
  - family-names: Robin
    given-names: Stéphane
    email: stephane.robin@inrae.fr
  journal: Frontiers in Ecology and Evolution
  year: '2021'
  doi: 10.3389/fevo.2021.588292
  url: https://www.frontiersin.org/articles/10.3389/fevo.2021.588292
repository: https://cranhaven.r-universe.dev
repository-code: https://github.com/pln-team/PLNmodels
commit: 93cc91799ba51cc684d3a1c065b39edb4a965f76
url: https://pln-team.github.io/PLNmodels/
date-released: '2025-03-10'
contact:
- family-names: Chiquet
  given-names: Julien
  email: julien.chiquet@inrae.fr
  orcid: https://orcid.org/0000-0002-3629-3429
references:
- type: conference-paper
  title: Variational inference for sparse network reconstruction from count data
  authors:
  - family-names: Chiquet
    given-names: Julien
  - family-names: Mariadassou
    given-names: Mahendra
  - family-names: Robin
    given-names: Stéphane
  collection-title: Proceedings of the 36th International Conference on Machine Learning
  collection-type: proceedings
  year: '2019'
  volume: '97'
  url: http://proceedings.mlr.press/v97/chiquet19a.html
  conference:
    name: Proceedings of the 36th International Conference on Machine Learning
- type: article
  title: Variational inference for probabilistic Poisson PCA
  authors:
  - family-names: Chiquet
    given-names: Julien
  - family-names: Mariadassou
    given-names: Mahendra
  - family-names: Robin
    given-names: Stéphane
  journal: The Annals of Applied Statistics
  year: '2018'
  volume: '12'
  url: https://projecteuclid.org/journals/annals-of-applied-statistics/volume-12/issue-4/Variational-inference-for-probabilistic-Poisson-PCA/10.1214/18-AOAS1177.full
  start: '2674'
  end: '2698'