Package: NicheBarcoding 1.0

Cai-qing YANG

NicheBarcoding: Niche-model-Based Species Identification

Species Identification using DNA Barcodes Integrated with Environmental Niche Models.

Authors:Cai-qing YANG [aut, cre], Xin-hai Li [aut], Michael christopher ORR [aut], Ai-bing ZHANG [aut]

NicheBarcoding_1.0.tar.gz
NicheBarcoding_1.0.zip(r-4.7)NicheBarcoding_1.0.zip(r-4.6)NicheBarcoding_1.0.zip(r-4.5)
NicheBarcoding_1.0.tgz(r-4.6-any)NicheBarcoding_1.0.tgz(r-4.5-any)
NicheBarcoding_1.0.tar.gz(r-4.7-any)NicheBarcoding_1.0.tar.gz(r-4.6-any)
NicheBarcoding_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
NicheBarcoding/json (API)

# Install 'NicheBarcoding' in R:
install.packages('NicheBarcoding', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yangcq-ivy/nichebarcoding/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT
Datasets:
  • bak.vir - Bak.vir data set, a class of matrix.
  • en.vir - En.vir data set, a class of RasterBrick.
  • LappetMoths - LappetMoths data set, a list of 8 data frames.

On CRAN:

Conda:

archivedpackagesr-universeopenjdk

3.88 score 5 stars 162 downloads 9 exports 24 dependencies

Last updated from:ad6ae97ebe (on package/NicheBarcoding). Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE272
source / vignettesOK184
linux-release-x86_64NOTE265
macos-release-arm64NOTE228
macos-oldrel-arm64NOTE174
windows-develNOTE252
windows-releaseNOTE248
windows-oldrelNOTE285
wasm-releaseOK144

Exports:extractSpeInfomonophyly.propNBSINBSI2niche.Model.Buildniche.PCApseudo.absent.pointspseudo.present.pointsspe.mantel.test

Dependencies:apeclassclusterdigestdismoe1071latticemapsMASSMatrixmgcvnlmepegaspermutepROCproxyrandomForestrasterRcpprJavaspspiderterravegan

Niche-model-Based Species Identification

Rendered fromhow-to-do-stuff-NBSI.Rmdusingknitr::rmarkdownon Jun 01 2026.

Last update: 2026-06-01
Started: 2026-06-01

NicheBaroding species identification

Rendered fromhow_it_works.Rmdusingknitr::rmarkdownon Jun 01 2026.

Last update: 2026-06-01
Started: 2026-06-01

NicheBaroding Species Identification

Rendered fromNBSI.Rmdusingknitr::rmarkdownon Jun 01 2026.

Last update: 2026-06-01
Started: 2026-06-01