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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MicroSEC" in publications use:'
type: software
license: MIT
title: 'MicroSEC: Sequence Error Filter for Formalin-Fixed and Paraffin-Embedded Samples'
version: 2.1.6
doi: 10.32614/CRAN.package.MicroSEC
abstract: Clinical sequencing of tumor is usually performed on formalin-fixed and
  paraffin-embedded samples and have many sequencing errors. We found that the majority
  of these errors are detected in chimeric read caused by single-strand DNA with micro-homology.
  Our filtering pipeline focuses on the uneven distribution of the artifacts in each
  read and removes such errors in formalin-fixed and paraffin-embedded samples without
  over-eliminating the true mutations detected in fresh frozen samples.
authors:
- family-names: Ikegami
  given-names: Masachika
  email: ikegamitky@gmail.com
repository: https://cranhaven.r-universe.dev
repository-code: https://github.com/MANO-B/MicroSEC
commit: bab26603337e121e226a7be7876fab9835f6a54e
url: https://github.com/MANO-B/MicroSEC/
date-released: '2024-08-25'
contact:
- family-names: Ikegami
  given-names: Masachika
  email: ikegamitky@gmail.com