Package: FinePop2 0.4
Reiichiro Nakamichi
FinePop2: Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)
Statistical tool set for population genetics. The package provides following functions: 1) estimators of genetic differentiation (FST), 2) regression analysis of environmental effects on genetic differentiation using generalized least squares (GLS) method, 3) interfaces to read and manipulate 'GENEPOP' format data files). For more information, see Kitada, Nakamichi and Kishino (2020) <doi:10.1101/2020.01.30.927186>.
Authors:
FinePop2_0.4.tar.gz
FinePop2_0.4.zip(r-4.7)FinePop2_0.4.zip(r-4.6)FinePop2_0.4.zip(r-4.5)
FinePop2_0.4.tgz(r-4.6-any)FinePop2_0.4.tgz(r-4.5-any)
FinePop2_0.4.tar.gz(r-4.7-any)FinePop2_0.4.tar.gz(r-4.6-any)
FinePop2_0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
FinePop2/json (API)
| # Install 'FinePop2' in R: |
| install.packages('FinePop2', repos = c('https://cranhaven.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cranhaven/cranhaven.r-universe.dev/issues
- herring - An example dataset of Atlantic herring.
- jsmackerel - An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.
Last updated from:adc32024d8 (on package/FinePop2). Checks:9 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 104 | ||
| source / vignettes | OK | 170 | ||
| linux-release-x86_64 | OK | 100 | ||
| macos-release-arm64 | OK | 99 | ||
| macos-oldrel-arm64 | OK | 70 | ||
| windows-devel | OK | 74 | ||
| windows-release | OK | 68 | ||
| windows-oldrel | OK | 69 | ||
| wasm-release | OK | 73 |
Exports:clip.GENEPOPglobalFSTGLSlocus_specificFSTpop_pairwiseFSTpop_specificFSTread.GENEPOP
Dependencies:
