Package: AmpGram
Type: Package
Title: Prediction of Antimicrobial Peptides
Version: 1.0
LazyData: TRUE
Date: 2020-05-19
Authors@R: c(person("Michal", "Burdukiewicz", 
           email = "michalburdukiewicz@gmail.com", 
           comment = c(ORCID = "0000-0001-8926-582X"),
           role = c("cre", "aut")),
           person("Katarzyna", "Sidorczuk", 
           email = "sidorczuk.katarzyna17@gmail.com",
           role = c("ctb")),
           person("Filip", "Pietluch", 
           email = "fpietluch@gmail.com",
           role = c("ctb")),
           person("Dominik", "Rafacz", 
           email = "dominikrafacz@gmail.com",
           role = c("aut")),
           person("Stefan", "Roediger", 
           email = "stefan.roediger@b-tu.de", 
           comment = c(ORCID = "0000-0002-1441-6512"),
           role = c("ctb")),
           person("Jaroslaw", "Chilimoniuk", 
           email = "jaroslaw.chilimoniuk@gmail.com", 
           comment = c(ORCID = "0000-0001-5467-018X"),
           role = c("ctb")))
Description: Predicts antimicrobial peptides using random forests
        trained on the n-gram encoded peptides. The implemented
        algorithm can be accessed from both the command line and
        shiny-based GUI. The AmpGram model is too large for CRAN and it
        has to be downloaded separately from the repository:
        <https://github.com/michbur/AmpGramModel>.
License: GPL-3
URL: https://github.com/michbur/AmpGram
BugReports: https://github.com/michbur/AmpGram/issues
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: biogram, devtools, pbapply, ranger, shiny, stringi
Suggests: DT, ggplot2, pander, rmarkdown, shinythemes, spelling
RoxygenNote: 7.1.0
Language: en-US
NeedsCompilation: no
Packaged: 2026-11-03 19:02:28 UTC; root
Author: Michal Burdukiewicz [cre, aut]
        (<https://orcid.org/0000-0001-8926-582X>), Katarzyna Sidorczuk
        [ctb], Filip Pietluch [ctb], Dominik Rafacz [aut], Stefan
        Roediger [ctb] (<https://orcid.org/0000-0002-1441-6512>),
        Jaroslaw Chilimoniuk [ctb]
        (<https://orcid.org/0000-0001-5467-018X>)
Maintainer: Michal Burdukiewicz <michalburdukiewicz@gmail.com>
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev git libgmp3-dev make libharfbuzz-dev libgit2-dev
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev
        libwebp-dev libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://cranhaven.r-universe.dev
Date/Publication: 2026-11-03 06:02:00 UTC
RemoteUrl: https://github.com/cranhaven/cranhaven.r-universe.dev
RemoteRef: package/AmpGram
RemoteSha: 18dfe03730d7460c5a9024990d17c45d040bd3ff
RemoteSubdir: AmpGram